PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.09G044200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family NF-YA
Protein Properties Length: 332aa    MW: 36295 Da    PI: 9.3979
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.09G044200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA86.34.6e-27162219158
            CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRaklee.ekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                          d p++VN+KQy++I++RR++Rak+   e+k  +++rk y+h SRh hA+rRpRg+gGrF
  Manes.09G044200.1.p 162 DGPIFVNPKQYHGIIRRRKTRAKAVLlENKS-TRNRKSYMHLSRHLHAMRRPRGTGGRF 219
                          57*********************99856666.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.4E-28160222IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115232.063161222IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.6E-19164186IPR001289Nuclear transcription factor Y subunit A
PfamPF020459.3E-24164219IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.6E-19196219IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MAVKTLYFKE HEEIVHNPIG QLLSVPSMPW WNAFGSQSSY GESCALFKPS SMEQPPTGED  60
QLSSMKQARR AIEQGIDKGN ITQFTIFPGD CKSLGDGQKT PQTAISLQTS LPEYHAHIDQ  120
GFGQPMIYAK YPGVDGSYGV FSTYGPQVLG RIMLPMNMTT DDGPIFVNPK QYHGIIRRRK  180
TRAKAVLLEN KSTRNRKSYM HLSRHLHAMR RPRGTGGRFL NTKTSDNGIG KTEATKAGDA  240
KISKSTGSQS SEVVQLDSGT LNSSTEANGG GSSLSGSEVT SMYTRRDLDY FSINFLASQV  300
PSFSLMMDSG HNNVMPTKWV AAADDCCNLK V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-14164227466NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.09G044200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021622336.10.0nuclear transcription factor Y subunit A-10-like
RefseqXP_021622337.10.0nuclear transcription factor Y subunit A-10-like
TrEMBLA0A2C9V9900.0A0A2C9V990_MANES; Uncharacterized protein
STRINGcassava4.1_011620m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37943464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.25e-71nuclear factor Y, subunit A10