PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.09G052600.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

NAC

Protein Properties

Length: 265aa MW: 30516.3 Da PI: 9.2527

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.09G052600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	125.1	5.9e-39	4	139	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.....leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgy 82 + GfrF Pt+eel+++yL++k+++k+ +++v++ +diy+++Pw+Lp+ ++ + ++w+fF++r++++a+g +++r t gy Manes.09G052600.1.p 4 AIGFRFYPTEEELISFYLHNKLQDKReddliQAIDRVVAVLDIYDFDPWQLPQlsgeLCRRDPEQWFFFVPRQEREAKGGKPKRLTPCGY 93 68*********************9888743444467777*******655653444677********************** PP NAM 83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 Wk+tg+ v+s++++ +g +t++fykgr p+g+kt+W m+ey++ Manes.09G052600.1.p 94 WKSTGSAGYVYSSNNSCIGAIRTMAFYKGRVPNGRKTQWKMNEYKA 139 ******************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.75E-42	2	169	IPR003441	NAC domain
PROSITE profile	PS51005	43.489	3	169	IPR003441	NAC domain
Pfam	PF02365	3.3E-20	5	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MELAIGFRFY PTEEELISFY LHNKLQDKRE DDLIQAIDRV VAVLDIYDFD PWQLPQLSGE 60 LCRRDPEQWF FFVPRQEREA KGGKPKRLTP CGYWKSTGSA GYVYSSNNSC IGAIRTMAFY 120 KGRVPNGRKT QWKMNEYKAT EAAAVSCSSS TGAHPRLRKE FSLCRVYKKS AKRLRTFGRR 180 PSATERGESG ARQVHSEEGR TIHESPPMLD RRSSPSFSQH NDGYLPQRAG DQSNTAVALS 240 NEPLWDWDHL YHWYHDGKDM HPMK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-28	1	171	15	167	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-28	1	171	15	167	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-28	1	171	15	167	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-28	1	171	15	167	NO APICAL MERISTEM PROTEIN
4dul_A	5e-28	1	171	15	167	NAC domain-containing protein 19
4dul_B	5e-28	1	171	15	167	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.09G052600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KR605218	0.0	KR605218.1 Manihot esculenta NAC transcription factors 80 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021621890.1	0.0	NAC domain-containing protein 90-like
TrEMBL	A0A2C9V9I8	0.0	A0A2C9V9I8_MANES; Uncharacterized protein
STRING	cassava4.1_029980m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF871	34	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	7e-70	NAC domain containing protein 90

Link Out ? help Back to Top
Phytozome	Manes.09G052600.1.p

Publications ? help Back to Top
Hu W, et al. Genome-Wide Identification and Expression Analysis of the NAC Transcription Factor Family in Cassava. PLoS ONE, 2015. 10(8): p. e0136993 [PMID:26317631]