PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.09G060400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 197aa    MW: 21527 Da    PI: 4.4255
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.09G060400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.00014169192123
                          EEETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                          + C  C++sF +   L++H +  H
  Manes.09G060400.1.p 169 FACVSCNRSFGSENALQSHTKAkH 192
                          78*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.06E-5166191No hitNo description
PROSITE profilePS5015711.323169196IPR007087Zinc finger, C2H2
PROSITE patternPS000280171192IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
TFVGKPQLES KKAKSPAEKT KPSSSEPKQK VKIIEPQKED KPKEETDESS DDSSDDDDST  60
DDQDMVANGE DEEDAESDDE DDESDDEDDE SDDEDEEEPT RLKAEQGKKR SAEPAKKVPV  120
ADKKAKLVTP QKTEGKKVVG HVATPHPSKQ TVKTPANNDQ KKDQTQKSFA CVSCNRSFGS  180
ENALQSHTKA KHSAAQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.09G060400.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021623113.13e-89histone deacetylase HDT1-like
TrEMBLA0A2C9V9J21e-133A0A2C9V9J2_MANES; Uncharacterized protein (Fragment)
STRINGcassava4.1_012243m1e-129(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10253067
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.13e-16histone deacetylase 2C