PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.09G061400.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

HD-ZIP

Protein Properties

Length: 224aa MW: 26092.6 Da PI: 8.5958

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.09G061400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.1	1.7e-19	62	115	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++t++qle Le+ F+++ +++ +++ +L+++lgL+ rq+ vWFqNrRa++k Manes.09G061400.1.p 62 KKKRLTNDQLESLERSFQEEIKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWK 115 56679************************************************9 PP
2	HD-ZIP_I/II	118.7	3.2e-38	61	152	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 ekk+rl+++q+++LE+sF+ee kL+p+rK++l+reLglqprq+avWFqnrRAR+k+kqlE+ y++Lk+++da++ e+++L++ev +L+ Manes.09G061400.1.p 61 EKKKRLTNDQLESLERSFQEEIKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWKAKQLERLYDTLKQEFDAVSVEKQKLQEEVMKLKGI 150 69*************************************************************************************976 PP HD-ZIP_I/II 91 lk 92 l+ Manes.09G061400.1.p 151 LR 152 65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.89E-19	51	119	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.151	57	117	IPR001356	Homeobox domain
SMART	SM00389	9.2E-17	60	121	IPR001356	Homeobox domain
Pfam	PF00046	7.7E-17	62	115	IPR001356	Homeobox domain
CDD	cd00086	1.37E-15	62	118	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.1E-20	67	116	IPR009057	Homeodomain-like
PRINTS	PR00031	3.8E-5	88	97	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	92	115	IPR017970	Homeobox, conserved site
PRINTS	PR00031	3.8E-5	97	113	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.5E-8	117	151	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MEWHGNLRTF VPRPENPFNF LYDSSCYDQY NQGMDVKPPV MSETAQVIVP VMEKLRYGSH 60 EKKKRLTNDQ LESLERSFQE EIKLDPDRKM KLSRELGLQP RQIAVWFQNR RARWKAKQLE 120 RLYDTLKQEF DAVSVEKQKL QEEVMKLKGI LREQATKKQV LSTGYTEISG EETLQSTWVG 180 IRSSGGKPRG THQQEIAECN YLLNVDEYNP GISSYWAVLP SYP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	109	117	RRARWKAKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.09G061400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021624349.1	1e-167	putative homeobox-leucine zipper protein ATHB-51
Swissprot	Q9LZR0	2e-51	ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBL	A0A2C9V9S3	1e-165	A0A2C9V9S3_MANES; Uncharacterized protein
STRING	cassava4.1_029341m	1e-166	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3394	34	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	8e-54	homeobox 51

Link Out ? help Back to Top
Phytozome	Manes.09G061400.1.p

Publications ? help Back to Top
Andres RJ, et al. Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.). Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66 [PMID:27999177] Vuolo F, et al. LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication. Genes Dev., 2018. 32(21-22): p. 1361-1366 [PMID:30366902]