PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.09G063000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB_related
Protein Properties Length: 140aa    MW: 16047.5 Da    PI: 4.557
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.09G063000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.63.7e-102262248
                         T-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqkyl 48
                         g W++Iar+++ gRt++++k++w+++l
  Manes.09G063000.1.p  2 G-WAKIARRLP-GRTDNEIKNYWRTHL 26
                         5.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.651130IPR017930Myb domain
PfamPF002497.1E-8226IPR001005SANT/Myb domain
SuperFamilySSF466897.18E-8233IPR009057Homeodomain-like
CDDcd001671.48E-7326No hitNo description
Gene3DG3DSA:1.10.10.606.5E-12331IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MGWAKIARRL PGRTDNEIKN YWRTHLKKKL QAQEGKQDFL YQKTDPSSWN YDMEEYKSVG  60
TTESSLDQNY ELSSFTYLNS PYETRLHDWM SSELSGDQTE VKIHGDSGGF DSSFCYLKLN  120
SEDGDTSVSD SLGSLWDMN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.09G063000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021623814.11e-96transcription factor MYB27-like
SwissprotQ9SCP12e-17MYB27_ARATH; Transcription factor MYB27
TrEMBLA0A2C9VA172e-98A0A2C9VA17_MANES; Uncharacterized protein
STRINGcassava4.1_022314m2e-84(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131692631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53200.11e-19myb domain protein 27
Publications ? help Back to Top
  1. Albert NW, et al.
    A conserved network of transcriptional activators and repressors regulates anthocyanin pigmentation in eudicots.
    Plant Cell, 2014. 26(3): p. 962-80
    [PMID:24642943]