PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.09G066000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family E2F/DP
Protein Properties Length: 247aa    MW: 27795.4 Da    PI: 5.0553
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.09G066000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP77.31.5e-241751471
              E2F_TDP 14 lklleksee.givtlnevakeLvse.................dvknkrRRiYDilNVLealnliekkekneirwkg 71
                         +k++ek+e+ g++t+neva+eLv+e                 d+kn+rRR+YD+lNVL+al++i+k +k+ei+wkg
  Manes.09G066000.1.p  1 MKVCEKVESkGTTTYNEVADELVAEfadpsnsvsspdqqqqyDEKNIRRRVYDALNVLMALDIISK-DKKEIQWKG 75
                         589****999********************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.7E-39181IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023193.2E-22175IPR003316E2F/DP family, winged-helix DNA-binding domain
PIRSFPIRSF0094045.5E-1121246IPR015648Transcription factor DP
SuperFamilySSF467853.94E-18176IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.5E-25175IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd144581.06E-4280183IPR014889Transcription factor DP, C-terminal
SMARTSM011388.7E-7482244IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.05E-4282195No hitNo description
PfamPF087817.6E-4183193IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MKVCEKVESK GTTTYNEVAD ELVAEFADPS NSVSSPDQQQ QYDEKNIRRR VYDALNVLMA  60
LDIISKDKKE IQWKGLPRTS LSDIEELKAE RLGLRNRIEK KIAYLQELEE QYVGLQNLIH  120
RNEQLYTSGK APNGGVSLPF ILVQTRPHAT VEVEISEDMQ LVHFDFNSTP FELHDDNYVL  180
KAMKFCERPQ SDDMAPNLAT DGGEGSSMSN MFPQQILTSP GTNTPIRPPT SPPIPGIIKA  240
RVKHEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B5e-321801793PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.09G066000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021623827.10.0transcription factor-like protein DPB, partial
SwissprotQ9FNY21e-119DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A2C9VA460.0A0A2C9VA46_MANES; Uncharacterized protein
STRINGcassava4.1_010769m1e-175(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33213366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-122Transcription factor DP