PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.09G066000.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family E2F/DP
Protein Properties Length: 246aa    MW: 27667.3 Da    PI: 5.0553
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.09G066000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP77.41.3e-241741471
              E2F_TDP 14 lklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71
                         +k++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+al++i+k +k+ei+wkg
  Manes.09G066000.2.p  1 MKVCEKVESkGTTTYNEVADELVAEfadpsnsvsspdqqqyDEKNIRRRVYDALNVLMALDIISK-DKKEIQWKG 74
                         589****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.0E-39180IPR011991Winged helix-turn-helix DNA-binding domain
PIRSFPIRSF0094042.3E-1111245IPR015648Transcription factor DP
SMARTSM013727.2E-26174IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467855.58E-19175IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023193.0E-22174IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd144588.03E-4379182IPR014889Transcription factor DP, C-terminal
SMARTSM011388.7E-7481243IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.05E-4281194No hitNo description
PfamPF087817.5E-4182192IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MKVCEKVESK GTTTYNEVAD ELVAEFADPS NSVSSPDQQQ YDEKNIRRRV YDALNVLMAL  60
DIISKDKKEI QWKGLPRTSL SDIEELKAER LGLRNRIEKK IAYLQELEEQ YVGLQNLIHR  120
NEQLYTSGKA PNGGVSLPFI LVQTRPHATV EVEISEDMQL VHFDFNSTPF ELHDDNYVLK  180
AMKFCERPQS DDMAPNLATD GGEGSSMSNM FPQQILTSPG TNTPIRPPTS PPIPGIIKAR  240
VKHEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B4e-321791793PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.09G066000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021623827.10.0transcription factor-like protein DPB, partial
SwissprotQ9FNY21e-120DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A2C9V8E50.0A0A2C9V8E5_MANES; Uncharacterized protein
STRINGcassava4.1_010769m1e-178(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-123Transcription factor DP