PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.09G069600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 519aa    MW: 56616.8 Da    PI: 10.0099
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.09G069600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.2e-056890123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         + C++C+k F r  nL+ H r H
  Manes.09G069600.1.p 68 FICEICNKGFQRDQNLQLHRRGH 90
                         89*******************88 PP
2zf-C2H212.70.00039144166123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC++C+k +  +s+ k H +t+
  Manes.09G069600.1.p 144 WKCEKCSKKYAVQSDWKAHSKTC 166
                          58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.4E-56790IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.46E-76790No hitNo description
SMARTSM003550.0226890IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8456890IPR007087Zinc finger, C2H2
PfamPF121716.2E-56890IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
SMARTSM00355130109139IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.9E-5132165IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.46E-7139164No hitNo description
SMARTSM00355140144164IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MQMMSDDAFS IPSSIPGFAP QQQINANPNP KPNSNHAPKK KRNLPGTPDP DAEVIALSPK  60
TLMATNRFIC EICNKGFQRD QNLQLHRRGH NLPWKLKQRT NKEVRKKVYL CPVKTCVHHD  120
PSRALGDLTG IKKHYSRKHG EKKWKCEKCS KKYAVQSDWK AHSKTCGTRE YKCDCGTLFS  180
RKDSFITHRA FCDALAEESA RINSAAATSL NFRNDTVNLP HHGGSGRGVQ EISGISQFSS  240
SGFRPDFNGL PSLNADQQKS GLSLWLNQAN PEINPADILV NHSNLYASPS STGLPEMMQI  300
RSNLYGSSST TKFGNLTLTG LPHGLKEEGG GNKPNIVMDS LPSLYSDNHQ HKQSKPAASM  360
SATALLQKAA QMGSTRSNQS FLGSNNCGLM SSSSSSNSTN LTTLSENRNE QLHQVFQNVN  420
KQPAESNLTV TKSSAPMGDA VMVVSSGLDQ VVMQSTVKQN DHPVQLKLRP GSNSIQSGLT  480
RDFLGMSDQS GRPFLPQELA KFVSMSSAMG LSQFTSNP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-37140204367Zinc finger protein JACKDAW
5b3h_F5e-37140204367Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
194106KLKQRTNKEVRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.09G069600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021623231.10.0zinc finger protein JACKDAW-like
TrEMBLA0A2C9V8I50.0A0A2C9V8I5_MANES; Uncharacterized protein
STRINGcassava4.1_005633m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03150.11e-106C2H2-like zinc finger protein