PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.09G090300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 189aa    MW: 21058.4 Da    PI: 10.1169
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.09G090300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.000684971123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C+ C+k F++   L  H  +H
  Manes.09G090300.1.p 49 FECKTCNKKFPSFQALGGHRASH 71
                         89**********99999998887 PP
2zf-C2H212.60.00042105127123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++Cg+ F     L  H+r+H
  Manes.09G090300.1.p 105 HECSICGMEFALGQALGGHMRKH 127
                          78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.17E-94871No hitNo description
PfamPF139122.4E-124973IPR007087Zinc finger, C2H2
SMARTSM003550.0874971IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.2014976IPR007087Zinc finger, C2H2
PROSITE patternPS0002805171IPR007087Zinc finger, C2H2
SuperFamilySSF576679.17E-9100127No hitNo description
PROSITE profilePS501579.286105127IPR007087Zinc finger, C2H2
PfamPF139128.8E-9105129IPR007087Zinc finger, C2H2
SMARTSM003550.09105127IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280107127IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MAMKRTRDNY RNLESLDMAK CLILLSQTLQ NNNPIKPFNT HHVDDDHLFE CKTCNKKFPS  60
FQALGGHRAS HKKPKIMGDN TNNDDNNKPI SVKLQISSAA KPKMHECSIC GMEFALGQAL  120
GGHMRKHRAA ITQGFGSAHA HPVVSKLPVM RRSNSIKRVF GLDLNLTPLE NDLEYLFGKM  180
APKVDPLI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.09G090300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021624412.11e-139zinc finger protein ZAT11-like
TrEMBLA0A2C9V9871e-138A0A2C9V987_MANES; Uncharacterized protein
STRINGcassava4.1_026397m1e-138(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.11e-51C2H2 family protein