PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.09G095100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 107aa    MW: 12346 Da    PI: 7.6413
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.09G095100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.84.4e-06527123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y+C+ C+k+Fs+   L  H++ H
  Manes.09G095100.1.p  5 YTCSFCNKCFSNARALGGHMNIH 27
                         9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.09E-7332No hitNo description
Gene3DG3DSA:3.30.160.609.2E-7331IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0014527IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.3532IPR007087Zinc finger, C2H2
PROSITE patternPS000280727IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    Send to blast
MVRSYTCSFC NKCFSNARAL GGHMNIHRKE RENLRKASDE NLLPLDTSKS MKPVDFPHLD  60
SEEINPLVSE SREDAYMLFS HRQTTQIELD LELRLGPPTH IKHHQR*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may regulate cell division and growth. {ECO:0000269|PubMed:12154136}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.09G095100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021622036.15e-45transcriptional regulator TAC1-like
SwissprotO809426e-13ZFP10_ARATH; Zinc finger protein 10
TrEMBLA0A2C9V9B01e-73A0A2C9V9B0_MANES; Uncharacterized protein
STRINGcassava4.1_033932m1e-74(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33353162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.12e-15zinc-finger protein 10