PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.09G095200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 164aa    MW: 18624.8 Da    PI: 4.6568
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.09G095200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.55.5e-063153123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y+C+ C+k+Fs+   L  H++ H
  Manes.09G095200.1.p 31 YTCSFCNKCFSNAQALGGHMNIH 53
                         9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.57E-72957No hitNo description
Gene3DG3DSA:3.30.160.603.8E-62955IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00143153IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.8433158IPR007087Zinc finger, C2H2
PROSITE patternPS0002803353IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MDGNQAIIRK STEQMMWRFD DQWGSGIVRS YTCSFCNKCF SNAQALGGHM NIHRKDRAKL  60
REASDENLLS LDISKSMKPA DIPHQDSEET NPLASESMEE ESNCLPKTPF SAYMDLMNCP  120
DGDEDKKMQL SHRQTTQVEL DLELRLGLEP YQASSTMSTR EFF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.09G095200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021622036.11e-121transcriptional regulator TAC1-like
TrEMBLA0A2C9V9D71e-119A0A2C9V9D7_MANES; Uncharacterized protein
STRINGcassava4.1_030622m1e-120(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33353162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.13e-23C2H2 family protein