PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.09G119400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRAS
Protein Properties Length: 709aa    MW: 76704.4 Da    PI: 6.0849
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.09G119400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS415.25.7e-1273226792374
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                           +lLl+cAeavs++++e+a+++L ++sel++p+g++ qR+aayf eA++arl++s+ ++y++lp+ + s  ++++ ++a+++f+ +sP++
  Manes.09G119400.1.p 322 LTLLLQCAEAVSADNFEEANKMLLEISELSTPYGTSAQRVAAYFSEAMSARLVNSCLGIYATLPSMPIS--HTQKMASAFQVFNGISPFV 409
                          579************************************************************999998..6889999************ PP

                 GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181
                          kfsh+taNqaI ea+e+e+rvHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+g     s e+le+tg+rL++fA++lg+pfef + 
  Manes.09G119400.1.p 410 KFSHFTANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGT----SMEALEATGKRLSDFAQKLGLPFEFFP- 494
                          **********************************************************....***************************. PP

                 GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                          va+++ +l++e+L+v+++Ea+aV++    h+l+d ++s ++    +L+l+++l Pkvv+vveq+++h ++sFl rf+ea++yysalfdsl
  Manes.09G119400.1.p 495 VAEKVGNLDPERLNVSKREAVAVHWLQ--HSLYDVTGSDTN----TLWLLQRLAPKVVTVVEQDLSH-AGSFLGRFVEAIHYYSALFDSL 577
                          7*************************9..999999999999....**********************.899******************* PP

                 GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlg 361
                           a++++eseer++vE++ll+rei+nv+a  g +r  + + + +Wre+l+++GFk ++l  +aa+qa lll +++sdgy++ e++g+l lg
  Manes.09G119400.1.p 578 GASYGEESEERHVVEQQLLSREIRNVLAVGGPSRSGELK-FYNWREKLRQSGFKGISLAGNAATQATLLLGMFPSDGYTLVEDNGALKLG 666
                          *********************************887776.************************************************** PP

                 GRAS 362 WkdrpLvsvSaWr 374
                          Wkd  L+++SaWr
  Manes.09G119400.1.p 667 WKDLCLLTASAWR 679
                          ************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.431295659IPR005202Transcription factor GRAS
PfamPF035142.0E-124322679IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009630Biological Processgravitropism
GO:0009956Biological Processradial pattern formation
GO:0048366Biological Processleaf development
GO:0051457Biological Processmaintenance of protein location in nucleus
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MTMLPSSTNL TPMTSGGPVS ASLCGFLSST GTPNFSSNET ISSSPQPQAP AVCGFSGLPL  60
FPSEREKNGN AAVPLVITTT SATTTGVASA TPTSSMEDPS ATAWIDGIIK DLIHSSTNVS  120
IPQLIQNVRE IIFPCNPSLA SLLEYRLRCL AEPIPNYPVD RRRKEGLPPR DYSNQGQASS  180
GLTLNLENVS SYPSLPDSTA AVAPVPPVVN QYSSWGSTPS MVCQGINQQL HHQVQLLHDQ  240
QQQQQGSPSS TSVTPPILAL NQGHPQQQEQ EKSSSAETEQ VANTGIASTP TSVAAGGGVT  300
SAREKKEELR QQKRDEEGLH LLTLLLQCAE AVSADNFEEA NKMLLEISEL STPYGTSAQR  360
VAAYFSEAMS ARLVNSCLGI YATLPSMPIS HTQKMASAFQ VFNGISPFVK FSHFTANQAI  420
QEAFEREDRV HIIDLDIMQG LQWPGLFHIL ASRPGGPPYV RLTGLGTSME ALEATGKRLS  480
DFAQKLGLPF EFFPVAEKVG NLDPERLNVS KREAVAVHWL QHSLYDVTGS DTNTLWLLQR  540
LAPKVVTVVE QDLSHAGSFL GRFVEAIHYY SALFDSLGAS YGEESEERHV VEQQLLSREI  600
RNVLAVGGPS RSGELKFYNW REKLRQSGFK GISLAGNAAT QATLLLGMFP SDGYTLVEDN  660
GALKLGWKDL CLLTASAWRP FHVTATTTMA AAATSIHHQY HHQRFATV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.03056803380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269|PubMed:16339910}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.09G119400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4052624e-35KM405262.1 UNVERIFIED: Jatropha curcas GRAS27 protein-like (GRAS27) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021622209.10.0protein SCARECROW-like
SwissprotQ2Z2E90.0SCR_IPONI; Protein SCARECROW
TrEMBLA0A2C9VBS40.0A0A2C9VBS4_MANES; Uncharacterized protein
STRINGcassava4.1_001737m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein