PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.09G124900.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

NAC

Protein Properties

Length: 246aa MW: 27685.8 Da PI: 5.8364

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.09G124900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	81.9	1.3e-25	8	123	4	127
NAM 4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 G +P+d+el+ + L +k++g + + i+ ++i+++ePw+L + v++ ++ewy F r++ ++r+tk+gy k tgk + Manes.09G124900.1.p 8 GALIRPNDKELL-QLLVAKIHGYDDPR---IPVININNFEPWELAQflGVNSYDREWYCFRYRQEP------NSRTTKAGYYKVTGKGSK 87 66679*****.99***99766...9*********84457888999*998774......479999******** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyr 127 ++++++e++g+k+ Lv+y+gr+p+g+kt+W mhe + Manes.09G124900.1.p 88 IKDRQQEEIGTKTFLVYYTGRTPNGVKTSWKMHEIT 123 ********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	27.59	5	142	IPR003441	NAC domain
SuperFamily	SSF101941	1.11E-25	11	139	IPR003441	NAC domain
Pfam	PF02365	7.6E-12	11	122	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MQAPYQLGAL IRPNDKELLQ LLVAKIHGYD DPRIPVININ NFEPWELAQF LGVNSYDREW 60 YCFRYRQEPN SRTTKAGYYK VTGKGSKIKD RQQEEIGTKT FLVYYTGRTP NGVKTSWKMH 120 EITATCLPDH QRSIILCKLI DRSENEGYLS SCNGNGHGYS MAASDSHHMA NHSSFDNGET 180 SWSMSPENQV TENGIPQQEG PELAPYPESF HGWTGQSYTS DNLPVPVAAA AEQGLFYDIF 240 GSPMF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-13	8	121	20	139	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-13	8	121	20	139	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-13	8	121	20	139	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-13	8	121	20	139	NO APICAL MERISTEM PROTEIN
3swm_A	3e-13	8	121	23	142	NAC domain-containing protein 19
3swm_B	3e-13	8	121	23	142	NAC domain-containing protein 19
3swm_C	3e-13	8	121	23	142	NAC domain-containing protein 19
3swm_D	3e-13	8	121	23	142	NAC domain-containing protein 19
3swp_A	3e-13	8	121	23	142	NAC domain-containing protein 19
3swp_B	3e-13	8	121	23	142	NAC domain-containing protein 19
3swp_C	3e-13	8	121	23	142	NAC domain-containing protein 19
3swp_D	3e-13	8	121	23	142	NAC domain-containing protein 19
4dul_A	2e-13	8	121	20	139	NAC domain-containing protein 19
4dul_B	2e-13	8	121	20	139	NAC domain-containing protein 19

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.09G124900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021624204.1	0.0	NAC domain-containing protein 69-like
TrEMBL	A0A2C9VA78	0.0	A0A2C9VA78_MANES; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF27826	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01550.1	1e-23	NAC domain containing protein 69

Link Out ? help Back to Top
Phytozome	Manes.09G124900.1.p