PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.09G137400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family LBD
Protein Properties Length: 244aa    MW: 26637.9 Da    PI: 6.899
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.09G137400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260115.82.8e-3643141198
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +C aCk+lrrkC ++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p ++r++a+ ++ yeA+ar++dPvyG+v++il+lqqq e 
  Manes.09G137400.1.p  43 PCGACKFLRRKCISGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPMNRRHEAVVTISYEAQARLSDPVYGCVSTILALQQQAEL 132
                          7***********************9989************************************************************99 PP

               DUF260  90 lkaelallk 98 
                          + ++++l++
  Manes.09G137400.1.p 133 AMVQTQLIN 141
                          998887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.30842144IPR004883Lateral organ boundaries, LOB
PfamPF031955.0E-3643140IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MAEPQCDATS DTRRKGIGKR ASAVPVESQS VAETGLPVPA VAPCGACKFL RRKCISGCIF  60
APHFGSDQGA ARFAAVHKVF GASNVSKLLL HIPMNRRHEA VVTISYEAQA RLSDPVYGCV  120
STILALQQQA ELAMVQTQLI NSRFAMANVL ENSQQQQQQQ QQLHHQHQQV SLLQPAYSNN  180
SSASTNLINM SNFTSNFELV TDTAPSSHSL EPLHLSRPSH DEEDDEEESR IPGIFADVIL  240
HRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-33401498119LOB family transfactor Ramosa2.1
5ly0_B3e-33401498119LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.09G137400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021621992.11e-156LOB domain-containing protein 20-like
SwissprotQ9SRV32e-75LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A2C9VBU31e-179A0A2C9VBU3_MANES; Uncharacterized protein
STRINGcassava4.1_026878m1e-180(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77153146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.18e-74LOB domain-containing protein 20