PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.09G139900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 313aa    MW: 35256.3 Da    PI: 8.608
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.09G139900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.74.8e-172875148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT+eEdell +++k+ G ++W+t +++ g+ R++k+c++rw +yl
  Manes.09G139900.1.p 28 RGPWTPEEDELLSNYIKKEGAERWRTLPKRAGLLRCGKSCRLRWMNYL 75
                         89******************************99************97 PP
2Myb_DNA-binding48.32.3e-1581126148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rgr  ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  Manes.09G139900.1.p  81 RGRIAPDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 126
                          678889****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.212375IPR017930Myb domain
SuperFamilySSF466893.67E-2825122IPR009057Homeodomain-like
SMARTSM007179.8E-132777IPR001005SANT/Myb domain
PfamPF002496.6E-152875IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-212982IPR009057Homeodomain-like
CDDcd001672.06E-103075No hitNo description
PROSITE profilePS5129424.57876130IPR017930Myb domain
SMARTSM007173.4E-1480128IPR001005SANT/Myb domain
PfamPF002497.0E-1482126IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-2483131IPR009057Homeodomain-like
CDDcd001674.65E-1186126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MRNPSSSSSP SARKTTATPC CSKVGIKRGP WTPEEDELLS NYIKKEGAER WRTLPKRAGL  60
LRCGKSCRLR WMNYLRPSVK RGRIAPDEED LILRLHRLLG NRWSLIAGRI PGRTDNEIKN  120
YWNTHLSKKL ISQGIDPRTH KPLNPNPNPS QRAQDPNQNS GLKSVHLEET GRTYRTIATK  180
VSQNFNMTNP DGYRNPIVDE GGNNNWLNFN GLVMGLQSDQ GHNNAEYNYI ANENEDPFSS  240
FLDALIDENE NLFTINQQNH HQQQQHLNNM AAPSVQVQPF VSSAQTFNNT SIWEAEVAPS  300
MAVLGEEDVG LT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-25281307108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.09G139900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021624330.10.0transcription repressor MYB5-like
SwissprotQ388502e-79MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A2C9VAQ30.0A0A2C9VAQ3_MANES; Uncharacterized protein
STRINGcassava4.1_033576m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38943064
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.11e-79myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]