PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.09G156900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GeBP
Protein Properties Length: 412aa    MW: 45842.4 Da    PI: 4.4443
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.09G156900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573118.34.1e-37127221297
               DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 
                          lfqrlw++eDei lLqG++d+++++g   ++d+  fy ++k++++++++k+qlveK+rrLKkK+++  +k++sgke+sf+++hdq +fe+
  Manes.09G156900.1.p 127 LFQRLWTDEDEIELLQGFLDYTTQRG-GNHHDTALFYGQIKSKLQLDFNKNQLVEKLRRLKKKYRNVLNKISSGKEFSFKSPHDQATFEI 215
                          79************************.6799*********************************************************** PP

               DUF573  92 skkiWg 97 
                          s+kiW 
  Manes.09G156900.1.p 216 SRKIWS 221
                          *****7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.3E-34128221IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MASEQDDAVF GHDLDDDDED SSQSQDDGDD LENDDVMVEN DDVLADEEDE EDLNSVSPSI  60
SSPATVPVAV PSASAVTIAV PNGGDPPSAS VESAPDPKRQ RVETTVVVHQ QEEKKPQPQQ  120
MDESRRLFQR LWTDEDEIEL LQGFLDYTTQ RGGNHHDTAL FYGQIKSKLQ LDFNKNQLVE  180
KLRRLKKKYR NVLNKISSGK EFSFKSPHDQ ATFEISRKIW SSTGQIGVVD GNLDDEEGNP  240
NPNHHNFNDV EIKIEDHKST PRSRKRSRSR LSAPAPSGVK VDDKRVSTEA FVVNTDNTNM  300
NNNTTTSTTT TTNNNSNLNV TFLIEETVKS CLTPLFKELL SNVMAAGPYN GRGIGGLAMN  360
AMPLSFGGGE MMTDDKWRKQ QILELEVYSR RLELVQDQIR AQLEELRSMG G*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1264269KRSRSR
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.09G156900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021623129.10.0probable transcription factor At3g04930
SwissprotF4K5T44e-96STKLU_ARATH; Probable transcription factor At5g28040
TrEMBLA0A2C9VDF30.0A0A2C9VDF3_MANES; Uncharacterized protein
STRINGcassava4.1_008694m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32553365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.22e-54DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. García-Cano E,Hak H,Magori S,Lazarowitz SG,Citovsky V
    The Agrobacterium F-Box Protein Effector VirF Destabilizes the Arabidopsis GLABROUS1 Enhancer/Binding Protein-Like Transcription Factor VFP4, a Transcriptional Activator of Defense Response Genes.
    Mol. Plant Microbe Interact., 2018. 31(5): p. 576-586
    [PMID:29264953]