PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.09G168000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB_related
Protein Properties Length: 1110aa    MW: 123372 Da    PI: 9.496
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.09G168000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.51.2e-114682341
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41
                         rW++eE +++++a + +G++ Wk++a++++ +R++++++
  Manes.09G168000.1.p 46 RWSEEELQQFYKAYRAHGME-WKKVAAEVP-NRSAEMVR 82
                         9*******************.*********.*****998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.1E-64391IPR001005SANT/Myb domain
SuperFamilySSF466893.89E-94491IPR009057Homeodomain-like
PROSITE profilePS500906.5284686IPR017877Myb-like domain
CDDcd001675.19E-84689No hitNo description
Gene3DG3DSA:1.10.10.602.2E-64684IPR009057Homeodomain-like
PfamPF002491.9E-104683IPR001005SANT/Myb domain
PfamPF065842.1E-33648748IPR033471DIRP domain
SMARTSM011352.1E-59648749IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1110 aa     Download sequence    Send to blast
MAPTRKKSVN KRFLNEVSPH KEVRNSNKNK ERVSGKRRLS DNLGPRWSEE ELQQFYKAYR  60
AHGMEWKKVA AEVPNRSAEM VRTLFKMNKA YLSLPEGTAS VVGLIAMMTD HYYSQEVSDS  120
EGESNDEPGM PRKPQKTKQV KVQPSTSKDS LQSHSIASTD GYLSLLKKGH FYGGQPRAVG  180
KRTPRVAVSY PYKKNDSQNY VLAKKGQKPQ NDVNDDGAHV AALALTEALK RGGSTQVCHT  240
QSGGTEHIKL SPVRSWEMMF PESKTGHTKF RVASVDEEWM VDGTSRGADN GAYARDTSSL  300
VDMEGVGTVE VHPKGKKFYR KKVKVEEIGN SQSDDGGEAC SGTEEGPKVN ALKGKTDIDG  360
SDAKIDEMSP QARKKRSGKR FSGDEFSALD ALQTLANLSV MESESSVQQN EERTVLTVDD  420
KSSKPEATST SRHRDKVKLL GHREKLLHPR SEVEGASRKS KLGRNTAIYA KPVSESKQGP  480
QFINNNINVL KRKRHSLVSK VSNAEVPIKL HLSEPLDTEP VDEEEIISAL KGKRTCQVST  540
VPKQRKAIGV SEGCFSDQKS SANDVAVSTA QVPVAKQVTL QTSKISRRKM SLKQSITRKE  600
RHSSENILKN QTNRCSISLH DTASYLREKF SCCLSSPMVR RWCTFEWFYS AIDYPWFAKR  660
EFVEYLNHVG LGHIPRLTRV EWGVIRSSLG KPRRFSEHFL HEEREKLKQY RDSVRTHYTE  720
LRTGAMDGLP TDLAKPLSVG QRVIAVHPKT RELHDGSVLT IDHDRCRVQF DCPEMGVEFV  780
KDIDCMPLNP FDNMPEALRR HGFSVMSKEL QVNGHSHIGG FTSTRHLDNS EIPMNTLVDA  840
NVQRKAASVD VVNAQQIASQ PSVVARLQVK EVDIQAPSDL NHAFDKKASS ALVNLRQHNA  900
YPGNTLPPWL KPTVNSSFLA GLPSSHDSFV SQESGSTVIE IVRGSRDKAH TMIDAAVQAI  960
SSMKEGEDAF VKIGEALDSI DRRQLASESK AQEIRSLEHV NGILSHHNQL ISSTLEPQVN  1020
NNASGPKSHN NTDKIEAAIP SELIKSCVAT LLMIQTCTER QYPPADVAQI IDSAVTSLHP  1080
CCPQNLPIYR EIQMCMGRIK TQILALIPT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.09G168000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021622902.10.0protein ALWAYS EARLY 2-like isoform X3
TrEMBLA0A2C9VD030.0A0A2C9VD03_MANES; Uncharacterized protein
STRINGcassava4.1_000578m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17833369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding