PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.09G174900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GATA
Protein Properties Length: 158aa    MW: 17653.3 Da    PI: 10.3101
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.09G174900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.97.7e-202559135
                 GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                         C+ C+ttkTplWR gp g+k+LCnaCG++yrkk++
  Manes.09G174900.1.p 25 CTDCKTTKTPLWRGGPAGPKSLCNACGIRYRKKRR 59
                         ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.6E-161971IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.75E-142060No hitNo description
PROSITE profilePS5011412.5192355IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.8E-162359IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.61E-142461No hitNo description
PROSITE patternPS0034402550IPR000679Zinc finger, GATA-type
PfamPF003208.8E-182559IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MMDDLWERKL LHDDEDKNIE MKKSCTDCKT TKTPLWRGGP AGPKSLCNAC GIRYRKKRRA  60
MLSLDKDKES EKKKKRSHST TTTTTLTTTT ATSASSVNNG NGLGDSLKMS LIEVGEKMMF  120
ERSSIVRKQR CQRRRRLGEE EQAAFSLMAL SCGSVLA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15675KRRAMLSLDKDKESEKKKKR
26574KDKESEKKKK
37377KKRSH
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.09G174900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021622601.11e-112GATA transcription factor 15-like
SwissprotQ8LG101e-34GAT15_ARATH; GATA transcription factor 15
TrEMBLA0A2C9VBX11e-110A0A2C9VBX1_MANES; Uncharacterized protein
STRINGcassava4.1_025356m1e-94(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15693298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.14e-17GATA transcription factor 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  3. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]