PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.09G181800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 736aa    MW: 78256.6 Da    PI: 6.3694
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.09G181800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.63.3e-16467513455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           hn  ErrRRdriN+++  L+el+P++      K++Ka++L +A+eY+k Lq
  Manes.09G181800.1.p 467 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 513
                          6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.62E-17459517No hitNo description
SuperFamilySSF474591.57E-20460524IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-20460521IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.349463512IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-13467513IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-17469518IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 736 aa     Download sequence    Send to blast
MPLSELVYRL AKGKLDSSQE KNPTCSTDLS SEPETDFVEL VWENGQIQSS KTRKIQFSSS  60
FPSQTSKIRD KDVANGSNTK MGRFGAMDSV IGEVPMSVPS VEMGLNQDDD MVPWLNYPIE  120
DSLQHDYCSE FLAELSGVTV NENSQTNYAS MEKRNCGNQS VRDPCPASVR NSLSLEQGHI  180
SRVSSTGDVD ASRPRTSSSQ LYPSPSQQCQ TSFPYFRSRV SAGNSESMSN LARHAASGDS  240
IGVPPSGGGV PSAKMQKQVP VSSATNPSLM NFSHFSRPAA LVKANLCNMG TKAGSGISNM  300
EKMVSKDKGS IASRSNPAES ILADTFSGLR KDISSNCHPA MVLPKVDAKS LDPTPAEESL  360
PAKRPEALDQ EDCKSDKNHC QLAESTTRGL VDGEKTAEHL VASSSVCSGN SVERVSDERT  420
QDLKRKHRET EDSEGPSEDV EEESVGAKKA APARGGPGSK RSRAAEVHNL SERRRRDRIN  480
EKMRALQELI PNCNKVDKAS MLDEAIEYLK TLQLQVQIMS MGAGLYMPSM MLPPGMPHMH  540
AGHMVQFSPM GVGMGMGMGM GYGMGMPDMI GGSSGCSMIQ APPMHGAHFP GPPMSGPSAL  600
HGMGGSNLPI FGLSAQGHPM PYPCAPLMPV SGGPLLKTTM GLNAGGLAGP VDNLNSGPGS  660
RSKDAIQNIS QAMQNSGANS SMNQTSTQCQ VTNERFEQHP SVQNSGQASE VTDRGAVKSA  720
NGNDNTPNQV TAGCD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1471476ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.09G181800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021623245.10.0transcription factor PIF3-like isoform X1
RefseqXP_021623246.10.0transcription factor PIF3-like isoform X1
TrEMBLA0A2C9VE550.0A0A2C9VE55_MANES; Uncharacterized protein
STRINGcassava4.1_002400m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52713353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-52phytochrome interacting factor 3