PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.09G185700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family CO-like
Protein Properties Length: 502aa    MW: 54953 Da    PI: 7.1949
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.09G185700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.61.8e-061251437
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                           C+ ++++ + l+C+ ++  lC  C ++ H+       H
  Manes.09G185700.1.p 12 VPCDFCSDQVAVLYCRADSAKLCLFCDQHVHSAnllsrkH 51
                         67***************************99545555555 PP
2zf-B_box23.31.3e-075498341
             zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                          ++C+++++++++  Ce+++  lC++C    H +      H ++p
  Manes.09G185700.1.p 54 SQICDNCSSEPVSVRCETDNLVLCRECDWDAHGScsvsasHYRIP 98
                         579************************999994477777777766 PP
3CCT63.46.8e-22448490143
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                          R  a++RYkeK+ktR+++K+irYesRKa+A++R+RvKGrFvk+
  Manes.09G185700.1.p 448 RGTAMQRYKEKKKTRRYDKHIRYESRKARADTRKRVKGRFVKA 490
                          6789*************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.04956IPR000315B-box-type zinc finger
SMARTSM003362.3E-12956IPR000315B-box-type zinc finger
CDDcd000211.29E-71244No hitNo description
PROSITE profilePS5011910.4095299IPR000315B-box-type zinc finger
CDDcd000213.64E-85699No hitNo description
SMARTSM003360.135799IPR000315B-box-type zinc finger
PfamPF062034.2E-16448490IPR010402CCT domain
PROSITE profilePS5101714.882448490IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MGSPKSDTKR SVPCDFCSDQ VAVLYCRADS AKLCLFCDQH VHSANLLSRK HLRSQICDNC  60
SSEPVSVRCE TDNLVLCREC DWDAHGSCSV SASHYRIPIE GFSGCPSALE LASIWGFDLE  120
EKNLDKEPSA PLIQSWNDGG VQDMVMQIEP WLSRSTGGVS YLDLMVPNGK AIVYGNVSGE  180
EMVTTSKRQR SPSCGRYKQV VHKQLMGLFK RNLMAGDGGG GENLMPETPS RSGWQGDVEA  240
ADFGNGNDEV TATTVAGSTV PQQPLQEQAP FTSLLMLASP MDLKPSGRIV GENLMWGGSA  300
SAQGTQIWDF NLGQLRTHEE SDQLEVEYGS SDAVFMIKNI GELMKETSLS NTKMLGGLYQ  360
LDCPMAHDDI SLFNNKSNNP TASQGPATSE SNNLPTARTS SGSTHGKLKN SSGGEDIQFM  420
EQKILVRGDS VRTMPPTKVD IELLAKNRGT AMQRYKEKKK TRRYDKHIRY ESRKARADTR  480
KRVKGRFVKA ITASPDGRTV L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.09G185700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC2977054e-31KC297705.1 Populus tomentosa COL gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021623776.10.0zinc finger protein CONSTANS-LIKE 15-like
TrEMBLA0A2C9VBX20.0A0A2C9VBX2_MANES; Uncharacterized protein
STRINGcassava4.1_006085m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47372843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28050.11e-111B-box type zinc finger protein with CCT domain