PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.10G005700.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

LBD

Protein Properties

Length: 229aa MW: 24794.3 Da PI: 8.9616

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.10G005700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	134.5	3.9e-42	42	141	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe +r da++slvyeA++r+rdPvyG++g i++lqqq+++l Manes.10G005700.1.p 42 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPEGQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSL 131 7*************************************************************************************** PP DUF260 91 kaelallkee 100 +ael+++++e Manes.10G005700.1.p 132 QAELNAVRAE 141 ****9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.595	41	142	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.6E-42	42	139	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MSRERERFDE IGKKIKRESD VSSQMGRRHM LGPPGTLNTI TPCAACKLLR RRCAQECPFS 60 PYFSPHEPQK FASVHKVFGA SNVSKMLMEV PEGQRADAAN SLVYEANVRL RDPVYGCMGA 120 ISALQQQVQS LQAELNAVRA EILKYKYREA NILPSSHVAL LSTGAVSVAA QSPSLPPPPT 180 TLPPPPPPPP PPPPLSPLSS SSSIYTHHQA TSATDYSTIS NENVSFFG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-46	34	156	3	125	LOB family transfactor Ramosa2.1
5ly0_B	5e-46	34	156	3	125	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.10G005700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021625453.1	1e-167	LOB domain-containing protein 15-like
Swissprot	Q8L5T5	4e-85	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A2C9V3A6	1e-166	A0A2C9V3A6_MANES; Uncharacterized protein
STRING	cassava4.1_029925m	1e-166	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2298	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	2e-86	LOB domain-containing protein 15

Link Out ? help Back to Top
Phytozome	Manes.10G005700.1.p

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]