PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.10G027400.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

LBD

Protein Properties

Length: 216aa MW: 23822.7 Da PI: 4.658

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.10G027400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126.1	1.7e-39	7	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C aCk+lrrkC+++Cv+apyf+ ++ + +fa+vhk+FGasnv+kll +lp ++r+da+ ++ yeA ar+rdP+yG+v++i++lqqq+++ Manes.10G027400.1.p 7 SCGACKFLRRKCTSECVFAPYFCYDEaATHFAAVHKVFGASNVSKLLLHLPVQNRSDAAITISYEALARMRDPIYGCVAHIFALQQQIAS 96 6*********************98689********************************************************* PP DUF260 90 lkaelallkee 100 l++e++ l+++ Manes.10G027400.1.p 97 LQEEIEILGHQ 107 ****99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.517	6	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.3E-37	7	104	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MTGLGSSCGA CKFLRRKCTS ECVFAPYFCY DEAATHFAAV HKVFGASNVS KLLLHLPVQN 60 RSDAAITISY EALARMRDPI YGCVAHIFAL QQQIASLQEE IEILGHQMAN LSVGIVSRGS 120 SQTTSNPNCE IQNYSLQDAI NMQYYQNQPA APLNVSGYAS GNQAFNSQMN AELPPIYEWE 180 DQNPFCESHP YTLDRLLEGA DQEVFPYCSW LDTGN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-34	3	114	7	117	LOB family transfactor Ramosa2.1
5ly0_B	3e-34	3	114	7	117	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.10G027400.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. {ECO:0000269\|PubMed:17259263}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021625564.1	1e-162	LOB domain-containing protein 33-like
Swissprot	Q9LHS8	5e-58	LBD33_ARATH; LOB domain-containing protein 33
TrEMBL	A0A2C9V4S7	1e-161	A0A2C9V4S7_MANES; Uncharacterized protein
STRING	cassava4.1_027792m	1e-161	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9196	32	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06080.1	2e-60	LOB domain-containing protein 33

Link Out ? help Back to Top
Phytozome	Manes.10G027400.1.p

Publications ? help Back to Top
Bargmann BO,Birnbaum KD,Brenner ED An undergraduate study of two transcription factors that promote lateral root formation. Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45 [PMID:24615800]