PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.10G046700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ARF
Protein Properties Length: 679aa    MW: 74826.8 Da    PI: 6.936
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.10G046700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.72.5e-24122223199
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f k+lt+sd+++ g +++p+ +ae++        +++ +  t++ +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD++vF 
  Manes.10G046700.1.p 122 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TIIAKDVHGETWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFL 209
                          89****************************986445444..8************************************************ PP

                          E-SSSEE..EEEEE-S CS
                   B3  84 ldgrsefelvvkvfrk 99 
                            + +++ l+v+++r+
  Manes.10G046700.1.p 210 --RAENGDLCVGIRRA 223
                          ..4488999****997 PP
2Auxin_resp115.16e-38275358183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                          aa+ a+++++FevvY+Prast+eF+v+++ v++++++++++GmRfkmafetedss++++ +Gt+++v+ +d +rWp S+Wr+L+
  Manes.10G046700.1.p 275 AATLAANGQPFEVVYYPRASTPEFCVRASAVRASMQIQWCLGMRFKMAFETEDSSRISWfMGTISSVQVADRIRWPSSPWRLLQ 358
                          68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.27E-30114227IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-38116226IPR015300DNA-binding pseudobarrel domain
CDDcd100175.98E-23121222No hitNo description
PROSITE profilePS5086313.465122224IPR003340B3 DNA binding domain
SMARTSM010192.0E-23122224IPR003340B3 DNA binding domain
PfamPF023621.6E-22122223IPR003340B3 DNA binding domain
PfamPF065072.9E-33275358IPR010525Auxin response factor
PROSITE profilePS5174522.436592672IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009733Biological Processresponse to auxin
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 679 aa     Download sequence    Send to blast
MIRDFGVMKS QRVAEKCLDS QLWHACAGGM VQVPPVNSKV FYFPQGHAEH AQGNVDFANC  60
KIPAMIACKV SAIKYLADPE TDEVFAKIRL IPLSDRDVEF MEDGSDDVLF DGTPQQEKPA  120
SFAKTLTQSD ANNGGGFSVP RYCAETIFPR LDYSAEPPVQ TIIAKDVHGE TWKFRHIYRG  180
TPRRHLLTTG WSNFVNQKKL VAGDSIVFLR AENGDLCVGI RRAKRGVGGG NECPSGWNSF  240
GGYSGFLRED ESKLMRRNVN GDMKGKLRPE SVIQAATLAA NGQPFEVVYY PRASTPEFCV  300
RASAVRASMQ IQWCLGMRFK MAFETEDSSR ISWFMGTISS VQVADRIRWP SSPWRLLQVA  360
WDEPDLLQNV KRVSPWLVEL VSNMPSVHLS PFAPPMKKLR LPQSPDFSLI GQLPLPSLTG  420
NPLGSNIPLC SVSDNIPAGI QGARHAQFEL SSADFHFQKL QSTLFPAGIK HLDHAAPTSR  480
IPNRNFMGIA ENKEKISCLL TMGNPTLSLK GNSETKVPHI MLFGQLILPD QQSSQSCSGD  540
TNGNSSSDGN PEKMANLSDG SVFHQTGLLE NSSDEGSPRY KDHQKTDLSL DTGHCKVFME  600
SEDVGRTLDL SVLGSYEELY KKLANMFSIE NSDTLSSVLY RDAAGAVKHT GDEPFSEFLK  660
TARRLTILTD SSSDNIGR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-80137933388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.10G046700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021626617.10.0auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A2C9V4I00.0A0A2C9V4I0_MANES; Auxin response factor
STRINGcassava4.1_002980m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]