PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.10G075000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HB-PHD
Protein Properties Length: 947aa    MW: 104421 Da    PI: 4.7144
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.10G075000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox39.69.1e-13825868952
                          HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
             Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                          +  ++ L + F++n+yp+++++e LAk+lg+t +qV  WF N R
  Manes.10G075000.1.p 825 EAATQGLHKSFRENQYPNRTAKESLAKELGITFKQVNKWFENAR 868
                          567899************************************99 PP
2PHD39.41.3e-13466521151
                          SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                  PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                          +C+ Cg+   +++++++lCdg C++ fH+ Cl ++l++e++p +   wlC+ C++k
  Manes.10G075000.1.p 466 FCANCGSkdVTSDNDIILCDGrCDRGFHQFCLVPPLSKEDIPPDdeGWLCPGCDCK 521
                          7******76667********55*******************99999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576116No hitNo description
SuperFamilySSF579031.37E-13456524IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.8E-13462521IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001611.021464521IPR019787Zinc finger, PHD-finger
CDDcd155043.26E-24466518No hitNo description
SMARTSM002498.5E-10466519IPR001965Zinc finger, PHD-type
PfamPF006281.0E-10466521IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590467518IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.601.4E-12799868IPR009057Homeodomain-like
PROSITE profilePS5007112.86814874IPR001356Homeobox domain
SMARTSM003891.3E-10816878IPR001356Homeobox domain
SuperFamilySSF466891.63E-11821873IPR009057Homeodomain-like
CDDcd000862.90E-11821868No hitNo description
PfamPF000463.1E-10825868IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 947 aa     Download sequence    Send to blast
MFKAKHMGIS PSLVSCQTKS YACPKHSRPE EMSDAECECS EISEQKLWTM SETVQTEPGD  60
TSTAVPQLLA SKELQQYSED ATTFTLAEKL EPQPEDACKS SLTVKNLGPK LTVIDQKLEF  120
GSEDTCSGPS KEYYLLGSGL IQDDNEPSTF TIDETSQPLS ADAAKNSLTE DLKLPCQDAS  180
KSSQIGESPC PQQSMSGRTL EFSSDIVFCE PSLERTKDCC DSVKGELVEI SMTLSSCTAT  240
GHLESPPVLL SKSSPSKYLG PASDNLVDIP AAEKLPPPHD EVDKHWNLEQ SETLSKGAVS  300
NSSWVGQRVK TAAKPSRKNY ILRSLVGSGR VLRSRSQEKS KAPDLSAKLA NISSKIEKTR  360
KNKKKRQGKI IESDEYSRIR KRLRYLLTRM SYEQTLITAY CAEGWKGLSL EKLKPEKELI  420
RATSEVSRCK LKIRDLFQRI DSLCTEGKLP ESLFDSEGQI SSEDIFCANC GSKDVTSDND  480
IILCDGRCDR GFHQFCLVPP LSKEDIPPDD EGWLCPGCDC KVDCIELLNE TQGTNISISD  540
SWEKVFPEAA AAGQNPDQNV GLPSDDSDDN DYDPDEPEID EESPGNESSS DESDFISASD  600
ELEAPPVDEQ HLGLPSDDSE DDDYNPDAPD LDEKLEESSS SHFTSDSEDL AATFDGKELS  660
REDENRVYIG PQGDTAREGS KHGGNKKQPL RSELLSILEA SNQDGSVPIS GKRNMERLDY  720
QRVYNETYGN ISSNSSDDED FTDTVGPKKR RESTEVSPAT MNGDASVTKI GKQDLKETEH  780
NPKRSCQQSN FENTSISPAK AHKGSSPSRS YGKTVRPSEY RRLGEAATQG LHKSFRENQY  840
PNRTAKESLA KELGITFKQV NKWFENARWS FNHSSSMDAL VRKSSEKISP VPKTNSKPHA  900
QGPETVDRDA TCNRSRSGES PAVDDGSQEG SKQNSKTQKS RKRKHT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1377383RIRKRLR
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.10G075000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021624836.10.0homeobox protein HAT3.1-like
TrEMBLA0A2C9V4290.0A0A2C9V429_MANES; Uncharacterized protein
STRINGcassava4.1_027437m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84373141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.12e-86Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain