PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.10G080300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 304aa    MW: 33940.3 Da    PI: 8.1815
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.10G080300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.44.7e-07102131840
                          HHHHHHHHHHHHHHHHHCTSCCC...TTS-STC CS
                  HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsK 40 
                           Er RR+++++ f++L  llP++   p kKl K
  Manes.10G080300.1.p 102 TERERRKKMRNMFANLHALLPQL---PPKKLQK 131
                          6*********************7...4444443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.18E-795139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.6E-698131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.44E-499128No hitNo description
PfamPF000101.6E-4102131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MSKEGPHHHE AFLWENQTWL LSNSDNTSAE KSEKKLIHSS NPLNNDQTQL GKELAKSKPS  60
RGDTNKNDKG SDDSDGKHQK GTGGGSGGGG GGESDHEIHI WTERERRKKM RNMFANLHAL  120
LPQLPPKKLQ KQKLERLQGV TTFSYEPTNI SSVCPQKLTD QSRESFLADH GCFNKLAIVS  180
TKPNSNNVLP IERYPVLFQT WTSSNVVLNI CGDEAQISIC SSKRPGLFTT ICYALEKHSI  240
EMISAHVSSD CNQSMYMIHA HFPADMANTP LPTDTTRLDE KMMTLAIHLS FWNLHTLIRL  300
PHK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.10G080300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4465913e-37AM446591.2 Vitis vinifera contig VV78X122741.11, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021625017.10.0transcription factor bHLH95-like
TrEMBLA0A2C9V4F80.0A0A2C9V4F8_MANES; Uncharacterized protein
STRINGcassava4.1_030216m1e-133(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47733358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.15e-16bHLH family protein