PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.10G086700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family M-type_MADS
Protein Properties Length: 214aa    MW: 24246.1 Da    PI: 8.4884
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.10G086700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF73.32e-231664250
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                         +i+ k+  qvtfskRr+g++KKA+EL++LC++e+a+i+fs+ +k++ +s
  Manes.10G086700.1.p 16 KISKKTHLQVTFSKRRAGLFKKASELCILCGVEIAIIVFSPANKIFSFS 64
                         799******************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.095767IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-29766IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.29E-26892IPR002100Transcription factor, MADS-box
CDDcd002655.49E-34880No hitNo description
PRINTSPR004044.3E-18929IPR002100Transcription factor, MADS-box
PfamPF003192.7E-241663IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-182944IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-184465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MVKRSSLGRQ RIAMEKISKK THLQVTFSKR RAGLFKKASE LCILCGVEIA IIVFSPANKI  60
FSFSYPEVES ILERFLVGNH PPTSDLAHQL IEAHRNAKVC ELSAQLTHIL DLLETEKKQG  120
EELSQMRKAS QSQCWWEAPI HELELPELLM LGDAMEDLKK NVIRQANKIL IEHKNSSPFL  180
AANCIRHVPD YGSKTNEFNV VPFTIPYVNN FGY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-17793187MEF2C
5f28_B4e-17793187MEF2C
5f28_C4e-17793187MEF2C
5f28_D4e-17793187MEF2C
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.10G086700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021625035.11e-158agamous-like MADS-box protein AGL61
TrEMBLA0A2C9V4I81e-157A0A2C9V4I8_MANES; Uncharacterized protein
STRINGcassava4.1_033492m1e-158(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-51AGAMOUS-like 62