PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.10G097400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GATA
Protein Properties Length: 305aa    MW: 32210.9 Da    PI: 5.0648
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.10G097400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.75.9e-17214249134
                 GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                          C++Cgt++  Tp++Rrgp g++tLCnaCGl+++ kg
  Manes.10G097400.1.p 214 CTHCGTSSnsTPMMRRGPAGPRTLCNACGLKWANKG 249
                          ********************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132013.97776111IPR010399Tify domain
SMARTSM009796.2E-1076111IPR010399Tify domain
PfamPF062003.9E-1281110IPR010399Tify domain
PfamPF062037.9E-16141183IPR010402CCT domain
PROSITE profilePS5101713.344141183IPR010402CCT domain
SMARTSM004011.7E-10208261IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-12211261No hitNo description
Gene3DG3DSA:3.30.50.102.2E-15213255IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.62E-15214264No hitNo description
PfamPF003201.2E-14214249IPR000679Zinc finger, GATA-type
PROSITE patternPS003440214241IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.302214265IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MPSSNIQPSM YPPEPMNTRT QLEEEDEDIA GGGEESIDNP NIHYENGTGT GGGVDDVPPS  60
AIHVTAGPDY PLVAGNGGDA DQLTLSFQGE VYVFDAVSPD KVQAVLLLLG GYEIPSGIPA  120
PVPLNLRGPS DLSGRSIQPQ RAASLRRFRE KRKERCFDKK IRYSVRKEVA LRMQRKKGQF  180
TSSKASSDEA GLASSGWSAT QGSGQDDSIV ETLCTHCGTS SNSTPMMRRG PAGPRTLCNA  240
CGLKWANKGI LRDLSKASSM RIKGPPAKPT EQGEGEANGL DIVTMAADIV SSSNGDNSTV  300
TAET*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145153RRFREKRKE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.10G097400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021626705.10.0GATA transcription factor 28-like isoform X1
SwissprotQ8H1G03e-75GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A2C9V4V00.0A0A2C9V4V0_MANES; Uncharacterized protein
STRINGcassava4.1_013130m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28363368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.23e-68ZIM-like 1