PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.10G097400.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GATA
Protein Properties Length: 290aa    MW: 30554 Da    PI: 5.2215
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.10G097400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.85.5e-17199234134
                 GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                          C++Cgt++  Tp++Rrgp g++tLCnaCGl+++ kg
  Manes.10G097400.2.p 199 CTHCGTSSnsTPMMRRGPAGPRTLCNACGLKWANKG 234
                          ********************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132013.9776196IPR010399Tify domain
SMARTSM009796.2E-106196IPR010399Tify domain
PfamPF062003.7E-126695IPR010399Tify domain
PROSITE profilePS5101713.344126168IPR010402CCT domain
PfamPF062037.3E-16126168IPR010402CCT domain
SMARTSM004011.7E-10193246IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-12196246No hitNo description
Gene3DG3DSA:3.30.50.102.0E-15198240IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS501149.302199250IPR000679Zinc finger, GATA-type
PfamPF003201.1E-14199234IPR000679Zinc finger, GATA-type
CDDcd002021.27E-15199249No hitNo description
PROSITE patternPS003440199226IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MNTRTQLEEE DEDIAGGGEE SIDNPNIHYE NGTGTGGGVD DVPPSAIHVT AGPDYPLVAG  60
NGGDADQLTL SFQGEVYVFD AVSPDKVQAV LLLLGGYEIP SGIPAPVPLN LRGPSDLSGR  120
SIQPQRAASL RRFREKRKER CFDKKIRYSV RKEVALRMQR KKGQFTSSKA SSDEAGLASS  180
GWSATQGSGQ DDSIVETLCT HCGTSSNSTP MMRRGPAGPR TLCNACGLKW ANKGILRDLS  240
KASSMRIKGP PAKPTEQGEG EANGLDIVTM AADIVSSSNG DNSTVTAET*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130138RRFREKRKE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.10G097400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021626706.10.0GATA transcription factor 28-like isoform X2
SwissprotQ8H1G01e-75GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A2C9V5210.0A0A2C9V521_MANES; Uncharacterized protein
STRINGcassava4.1_013130m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.22e-68ZIM-like 1