PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.10G120400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family TCP
Protein Properties Length: 563aa    MW: 58079.7 Da    PI: 8.5576
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.10G120400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP131.39.2e-411602662114
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgka 90 
                          +++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLl+qa+pai+++tgt++++a+++  ++s +ss+s+  ++  
  Manes.10G120400.1.p 160 TPAKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLRQAEPAIIAATGTGTIPANFStLNVSLRSSGSTLLAP-- 247
                          789******************************************************************9997777888777722222.. PP

                  TCP  91 aksaakskksqksaasalnlakes 114
                               +sk++++s + al+la++ 
  Manes.10G120400.1.p 248 -----PSKSAPHSFHGALALAHHP 266
                          .....3333333333333333322 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.3E-37165288IPR005333Transcription factor, TCP
PROSITE profilePS5136928.426166220IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MEVTDTQSNK QNNTTQEPHQ QHRHHHHHQV SFNGRSSSTG GGPSPPGPFM GSISIQAGLS  60
HVHHHLHGLS SSVPINTGSA PSTSTSSSLS SSSSSSSSTS TSTSSAAPPR LVDASLAIAT  120
RSGPLLDSGK KNLQQQNLSI VTTTSTTTAT TTTNTSVTAT PAKRSTKDRH TKVDGRGRRI  180
RMPATCAARV FQLTRELGHK SDGETIEWLL RQAEPAIIAA TGTGTIPANF STLNVSLRSS  240
GSTLLAPPSK SAPHSFHGAL ALAHHPHYEQ GFAHSALLGF HHQQQQQQHL MTSDQIAVAL  300
PCGGGGGGGG GGGGESGRDA RGDSGENYMR KRFREDLFKE DNQQQQEGES GSGGTSGGGV  360
GGGGGGGGSP IKGFKSGLQL PKPQQQDTGS CGLLRPSNNI SPATAMWAMA PAPSSGSTIW  420
MLPVGAAGGG PGISIGTTGA GPSEAQPQMW PFPTATPAGG NSLQAPLNFM PRFNLSAGNL  480
EFQGGRGTPL QLGSMLMQQQ PSQHLGLGMA ESNFGMLAAL NAYSRGGLNM NSEQNNQLDQ  540
HHQHQQPQGT DSTGDEDPNS SQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1355368SGGGVGGGGGGGGS
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.10G120400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021626257.10.0transcription factor TCP8-like
TrEMBLA0A2C9V6T10.0A0A2C9V6T1_MANES; Uncharacterized protein
STRINGcassava4.1_034425m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60773050
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.12e-60TCP family protein