PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.10G121100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family B3
Protein Properties Length: 131aa    MW: 15477.7 Da    PI: 7.671
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.10G121100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.88.1e-137104196
                          EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvF 82 
                          f k+l++ dvl    l++p + + ++    +g    s++    d++g +W+++l+ r ++ r    ++l++ W +Fv+++gL  +D v+F
  Manes.10G121100.1.p   7 FTKQLSRTDVLYA--LSVPSNAL-QYfiipEGA--HSVEFEAVDLTGFTWRFRLSTRSTG-RypkpVILQSSWHRFVEQKGLIPNDRVMF 90 
                          7899988888875..99**9999.674665333..678899999**********753333.34777************************ PP

                          EE-SSSEE..EEEE CS
                   B3  83 kldgrsefelvvkv 96 
                           ld+++e   + +v
  Manes.10G121100.1.p  91 FLDHDEENGIRCRV 104
                          **998665455555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.83E-12398IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-134107IPR015300DNA-binding pseudobarrel domain
CDDcd100178.37E-11696No hitNo description
SMARTSM010192.0E-57110IPR003340B3 DNA binding domain
PfamPF023624.8E-107103IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MEQIQLFTKQ LSRTDVLYAL SVPSNALQYF IIPEGAHSVE FEAVDLTGFT WRFRLSTRST  60
GRYPKPVILQ SSWHRFVEQK GLIPNDRVMF FLDHDEENGI RCRVRAQRKI MRLFGYDFWV  120
DVQDLHFYDV *
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.10G121100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011007874.14e-52PREDICTED: uncharacterized protein LOC105113410
TrEMBLA0A2C9V7412e-92A0A2C9V741_MANES; Uncharacterized protein
STRINGcassava4.1_027512m3e-93(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1390729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25730.13e-08ethylene response DNA binding factor 3