PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.10G121400.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

Protein Properties

Length: 94aa MW: 10581.1 Da PI: 8.0594

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.10G121400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	34.9	2.7e-11	5	89	2	93
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE. CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefe 91 k+l +v ++ l +p + +++ +++ + d +g++W++ ++ + + ++ v+++GW eF+ +L +g +++F+ d ++ ++++ Manes.10G121400.1.p 5 SKIL--TSVDINKGLEIPHDRCDDR-------MKILVADVEGNTWNFVCCTKSGNKQPVFKNGWLEFAGHWNLAAGTTITFYKDiDQaTGAQ 87 5555..3344444588888888333.......579************88777788***********************4433335555 PP .E CS B3 92 lv 93 ++ Manes.10G121400.1.p 88 YK 89 55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.2E-9	3	81	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.29E-11	3	79	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.40E-12	3	93	No hit	No description
Pfam	PF02362	2.2E-8	17	88	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 94 aa Download sequence Send to blast
MEIFSKILTS VDINKGLEIP HDRCDDRMKI LVADVEGNTW NFVCCTKSGN KQPVFKNGWL 60 EFAGHWNLAA GTTITFYKDI DQATGAQYKI RVR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.10G121400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021625663.1	2e-53	uncharacterized protein LOC110624707
TrEMBL	A0A2C9V6U2	5e-64	A0A2C9V6U2_MANES; Uncharacterized protein
STRING	cassava4.1_028150m	2e-57	(Manihot esculenta)

Link Out ? help Back to Top
Phytozome	Manes.10G121400.1.p