PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.10G122700.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

Protein Properties

Length: 115aa MW: 13585 Da PI: 10.7147

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.10G122700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	32.3	1.7e-10	4	91	1	89
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldg 86 f+k+l s++ ++rl +p +f++ + +g++ +l+++ +++++ ++++ rk + + vltkGW eFv+ +Lk+gD +v++ + Manes.10G122700.1.p 4 FKKEL--SSTDINKRLAVPTRFFQLIrprfKGNHFL--DLKVKY-KNQKMGLRCCRRKEGTHpkPVLTKGWVEFVRREKLKAGDRIVLEEE- 89 56666..66666678******8778877555433..444433.56888999965555555889**********************33. PP SSE CS B3 87 rse 89 +e Manes.10G122700.1.p 90 -DE 91 .33 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	4.0E-13	3	91	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.35E-9	3	102	No hit	No description
SuperFamily	SSF101936	6.28E-11	3	93	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	0.0035	4	106	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.9E-7	4	92	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 115 aa Download sequence Send to blast
MEYFKKELSS TDINKRLAVP TRFFQLIRPR FKGNHFLDLK VKYKNQKMGL RCCRRKEGTH 60 PKPVLTKGWV EFVRREKLKA GDRIVLEEED EATAGVEFRI EVQKKPFRLF GKDI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.10G122700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2C9V6X4	2e-77	A0A2C9V6X4_MANES; Uncharacterized protein
STRING	cassava4.1_027733m	3e-78	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12594	4	14

Link Out ? help Back to Top
Phytozome	Manes.10G122700.1.p