PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.10G123900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family B3
Protein Properties Length: 123aa    MW: 13910 Da    PI: 6.2529
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.10G123900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.43.3e-101090383
                         EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3  3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFk 83
                         +++++    +sg l+++ + +++   ++ +++ + + de gr+W + +++  + + g  +l+ GW +Fv+ ++L++gD v ++
  Manes.10G123900.1.p 10 SKMLTRTDIESG-LCISTSSLSQLPFDEGQQVNMHVHDEGGREWIFPCTIkeDENVG-RFLSVGWLDFVRFKDLRAGDQVNIH 90
                         556677777777.99******9998888999*****************874444444.57999***************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.29E-9488IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.5E-11592IPR015300DNA-binding pseudobarrel domain
CDDcd100173.15E-9887No hitNo description
PfamPF023622.1E-71090IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MATTKLVLFS KMLTRTDIES GLCISTSSLS QLPFDEGQQV NMHVHDEGGR EWIFPCTIKE  60
DENVGRFLSV GWLDFVRFKD LRAGDQVNIH EEVTKSEVPA TLMKIRVQRK IRLFGVDIWA  120
AV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.10G123900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011002451.12e-43PREDICTED: uncharacterized protein LOC105109425
TrEMBLA0A2C9V6Y44e-85A0A2C9V6Y4_MANES; Uncharacterized protein
STRINGcassava4.1_028443m2e-80(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13182519