PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.10G124500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family B3
Protein Properties Length: 129aa    MW: 14810.2 Da    PI: 10.1986
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.10G124500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.83.4e-12499194
                         EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS. CS
                   B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkld.gr. 87
                         f k+lt+sd l++  l++p + ++++   +k  ++ l ++d sg++W++++++   + s+ +v++ +W +Fv++++Lk  D++v++ + ++ 
  Manes.10G124500.1.p  4 FSKILTSSDILRR--LSMPENTIKAFpPAQKGHEIILHVKDDSGNVWSFRCRIpaIGFSKPVVFG-NWFKFVRSKDLKPSDTIVLYKEmDEs 92
                         7789988888765..9*******999*777888999***************98855555557777.*******************9442333 PP

                         SEE..EE CS
                   B3 88 sefelvv 94
                         s++++++
  Manes.10G124500.1.p 93 SGAQYKI 99
                         5555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508638.912105IPR003340B3 DNA binding domain
SuperFamilySSF1019363.34E-12388IPR015300DNA-binding pseudobarrel domain
CDDcd100171.79E-183103No hitNo description
Gene3DG3DSA:2.40.330.101.1E-14392IPR015300DNA-binding pseudobarrel domain
PfamPF023625.8E-104100IPR003340B3 DNA binding domain
SMARTSM010190.00574105IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MAIFSKILTS SDILRRLSMP ENTIKAFPPA QKGHEIILHV KDDSGNVWSF RCRIPAIGFS  60
KPVVFGNWFK FVRSKDLKPS DTIVLYKEMD ESSGAQYKIE VKKRDQVIRK DTVTCKNTLV  120
INHHYHYL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.10G124500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017970335.13e-27PREDICTED: AP2/ERF and B3 domain-containing transcription repressor RAV2
TrEMBLA0A2C9V7719e-91A0A2C9V771_MANES; Uncharacterized protein
STRINGcassava4.1_024702m3e-73(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13561527
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.17e-07B3 family protein