PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.10G124600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family B3
Protein Properties Length: 106aa    MW: 11944.1 Da    PI: 10.5245
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.10G124600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.22.3e-11499194
                         EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEE..E-SS CS
                   B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFk..ldgr 87
                         f kvlt+sd l++  l++p + ++++   +k  ++ l ++d  g  W++++++   + s+ +v++ +W +Fv++++Lk gD++v++  +d++
  Manes.10G124600.1.p  4 FSKVLTSSDILRR--LSMPENTLKAFpPAQKGHEIILPVKDDAGILWSFRCRIpaIGFSKPVVFG-NWFKFVRSKDLKPGDTIVLYkeMDKS 92
                         7899988888865..9*******9999777788999***************98855555557777.*******************9433333 PP

                         SEE..EE CS
                   B3 88 sefelvv 94
                         s++++++
  Manes.10G124600.1.p 93 SGAQYKI 99
                         5555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508638.9662105IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.2E-14392IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-12387IPR015300DNA-binding pseudobarrel domain
CDDcd100176.53E-193103No hitNo description
PfamPF023621.6E-94100IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MAIFSKVLTS SDILRRLSMP ENTLKAFPPA QKGHEIILPV KDDAGILWSF RCRIPAIGFS  60
KPVVFGNWFK FVRSKDLKPG DTIVLYKEMD KSSGAQYKIE VKKRD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.10G124600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2C9V5L87e-71A0A2C9V5L8_MANES; Uncharacterized protein
STRINGcassava4.1_023649m1e-71(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13561527
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.11e-07B3 family protein