PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.10G124700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family B3
Protein Properties Length: 120aa    MW: 13518.5 Da    PI: 5.121
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.10G124700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.11.2e-1114861183
                         HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFk 83
                          +s+ l++p + +     ++  s ++ + d+sg++W + +++ r+ s + +l+ GW eFv+ ++L ++D v+F 
  Manes.10G124700.1.p 14 IESC-LSFPTSSLGPLPFQEGHSLDMNVHDQSGQEWIFSCTIqRNDSVGQFLSVGWLEFVRHKNLAVNDEVIFV 86
                         4444.77777777666667778899***************885666667************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100171.64E-8485No hitNo description
Gene3DG3DSA:2.40.330.104.2E-10889IPR015300DNA-binding pseudobarrel domain
PfamPF023623.3E-91886IPR003340B3 DNA binding domain
SuperFamilySSF1019361.16E-83187IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MAILITKLLS QADIESCLSF PTSSLGPLPF QEGHSLDMNV HDQSGQEWIF SCTIQRNDSV  60
GQFLSVGWLE FVRHKNLAVN DEVIFVEEAL ENQAVRSCRI KIQVKRKIRL FGNDIWADV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.10G124700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011002451.19e-51PREDICTED: uncharacterized protein LOC105109425
TrEMBLA0A2C9V7Q92e-82A0A2C9V7Q9_MANES; Uncharacterized protein
STRINGcassava4.1_033446m3e-83(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13182519