PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.10G124800.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

Protein Properties

Length: 104aa MW: 11726.5 Da PI: 8.2368

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.10G124800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	39.5	9.8e-13	4	99	1	93
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr. 87 f k+l +v ++ l +p + +++ +++ + +++ + d +g++W++ + + + ++ v+++GW eF+ +L +g +++F+ + ++ Manes.10G124800.1.p 4 FSKIL--TSVDIHRGLEIPHDRCDDVlveLLITGQRMKILVADVEGNTWNFVCFTKSGNKQPVFKNGWLEFAGHRNLAAGTTITFYKEiDQa 93 55666..445555569*****9999997778899*************65666666**********************9332333 PP SEE..E CS B3 88 sefelv 93 ++++++ Manes.10G124800.1.p 94 TGAQYK 99 555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	6.7E-11	3	91	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.28E-11	3	103	No hit	No description
SuperFamily	SSF101936	1.24E-11	3	88	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	3.9E-10	4	98	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 104 aa Download sequence Send to blast
MEIFSKILTS VDIHRGLEIP HDRCDDVLVE LLITGQRMKI LVADVEGNTW NFVCFTKSGN 60 KQPVFKNGWL EFAGHRNLAA GTTITFYKEI DQATGAQYKI RVR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.10G124800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021625663.1	2e-62	uncharacterized protein LOC110624707
TrEMBL	A0A2C9V6X1	1e-71	A0A2C9V6X1_MANES; Uncharacterized protein
STRING	cassava4.1_028150m	2e-72	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19850.1	3e-08	ARF family protein

Link Out ? help Back to Top
Phytozome	Manes.10G124800.1.p