PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.10G124900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family B3
Protein Properties Length: 107aa    MW: 12016.8 Da    PI: 6.5088
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.10G124900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.14.8e-114101192
                          EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFk 83 
                          f k+l   +v  ++ l +p + +++     +++ + +++ + d +g+ W++ +   k+++      v+++GW eF+   +L +g +++F+
  Manes.10G124900.1.p   4 FSKIL--TSVDINKGLEIPHDRCDDVlaeLLITGQRMEILVADMQGNPWKFVCFT-KSGNNqlpnPVFKTGWLEFAGHWNLAAGTTITFY 90 
                          56666..444555569*******9999997788899*****************44.4444447889***********************9 PP

                          E-.SS.SEE.. CS
                   B3  84 ld.gr.sefel 92 
                           + ++ +++++
  Manes.10G124900.1.p  91 KEiDQaTGAQY 101
                          33233355555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.3E-10394IPR015300DNA-binding pseudobarrel domain
CDDcd100172.64E-93106No hitNo description
SuperFamilySSF1019369.42E-10391IPR015300DNA-binding pseudobarrel domain
PfamPF023621.3E-84101IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    Send to blast
MEIFSKILTS VDINKGLEIP HDRCDDVLAE LLITGQRMEI LVADMQGNPW KFVCFTKSGN  60
NQLPNPVFKT GWLEFAGHWN LAAGTTITFY KEIDQATGAQ YKIRVR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.10G124900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021625663.19e-76uncharacterized protein LOC110624707
TrEMBLA0A2C9V6Z62e-74A0A2C9V6Z6_MANES; Uncharacterized protein
STRINGcassava4.1_022215m5e-69(Manihot esculenta)