PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.10G153300.2.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

C2H2

Protein Properties

Length: 415aa MW: 46442 Da PI: 9.538

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.10G153300.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.0005	363	382	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cgk+F ++ L+ H++++ Manes.10G153300.2.p 363 CSLCGKTF-KPEKLHIHMKSC 382 ******.********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06136	3.6E-45	18	313	IPR010369	Protein of unknown function DUF966

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence Send to blast
MEASKPIPKV GGEVRRLHII YFLSHMGRIE HPHLIRVHHL NRNGVYLRDV KRWMADLRGK 60 EMPEAFSWSY KRRYKNGYVW QDLLDDDLIT PISDNEYVLK GSEIFPTTHF DTTGSGENRA 120 SIFKNDKHVE VGNEDKQEEQ ERSSTKEDNQ ISPDTSIDIS MKTSSEIYHE SPVFSSERST 180 LTQDSLKRPD DSHEEEMEKF ESLSSSSFYS NLLGKKKEKK KNKKKTNSEA SSHNEEDIDR 240 SSSSIEKMGS PSSSSSPQSQ SQFAKSKSYS SEASKMLRNL MTCGAADTND AALITINKSS 300 LRKEEICKGG SSRALGTLWN QQQQCNASRR SFDGMKDSKQ HKSGFNNPKG VAAAYKPVGA 360 PICSLCGKTF KPEKLHIHMK SCKGKRSYAK TAAASVGKNP SPSMNSMNQL MAIS*

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence Send to blast

MEASKPIPKV GGEVRRLHII YFLSHMGRIE HPHLIRVHHL NRNGVYLRDV KRWMADLRGK  60
EMPEAFSWSY KRRYKNGYVW QDLLDDDLIT PISDNEYVLK GSEIFPTTHF DTTGSGENRA  120
SIFKNDKHVE VGNEDKQEEQ ERSSTKEDNQ ISPDTSIDIS MKTSSEIYHE SPVFSSERST  180
LTQDSLKRPD DSHEEEMEKF ESLSSSSFYS NLLGKKKEKK KNKKKTNSEA SSHNEEDIDR  240
SSSSIEKMGS PSSSSSPQSQ SQFAKSKSYS SEASKMLRNL MTCGAADTND AALITINKSS  300
LRKEEICKGG SSRALGTLWN QQQQCNASRR SFDGMKDSKQ HKSGFNNPKG VAAAYKPVGA  360
PICSLCGKTF KPEKLHIHMK SCKGKRSYAK TAAASVGKNP SPSMNSMNQL MAIS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	215	223	KKEKKKNKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.10G153300.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021625151.1	0.0	uncharacterized protein LOC110624365
TrEMBL	A0A2C9V6P3	0.0	A0A2C9V6P3_MANES; Uncharacterized protein
STRING	cassava4.1_025631m	0.0	(Manihot esculenta)

Link Out ? help Back to Top
Phytozome	Manes.10G153300.2.p