PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.11G002500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRAS
Protein Properties Length: 472aa    MW: 53198.2 Da    PI: 6.5133
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.11G002500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS450.89e-138424661374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsP 89 
                          l++lL +cA++v++g+ e+a+ +L+++s+las dgd+mqR+aayft ALa ++++  +++l +al+ +++s   +see+ +++lf+e++P
  Manes.11G002500.1.p  42 LIHLLNACANHVAAGNVENANICLEQISHLASADGDTMQRIAAYFTVALADKILKkGWPGLHRALTFTKKS--LVSEEILVQRLFFELFP 129
                          689**************************************************9988******99999887..7**************** PP

                 GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179
                          ++k++++++NqaI ea+ege++vHiiD++  +++QW++Llq+L +Rpegpp+lRiTg+++    +ke le+++ rL++ Ae+l++pf+f+
  Manes.11G002500.1.p 130 FVKIAYVITNQAIIEAMEGEKMVHIIDLNSFEPAQWINLLQTLRARPEGPPHLRITGIHE----QKEVLEQMAIRLTEEAEKLDIPFQFH 215
                          ************************************************************....9************************* PP

                 GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrll....................................................... 214
                          + ++++ledl++e+Lrvk+gEalaV++vlqlh+ll                                                       
  Manes.11G002500.1.p 216 P-IVSKLEDLDIESLRVKTGEALAVSSVLQLHTLLaaddemlkrnspsesknpisynfqralqinknqrtlgewlqkdlvhvpgaspdsa 304
                          *.7999*********************************************************************************999 PP

                 GRAS 215 ......desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298
                                + s     +  ++L+++++lsPk++v++eqe++hn++s++er++eal++y+alfd+le++++r+s er+ +E++l+g+ei+n++
  Manes.11G002500.1.p 305 lsplslAPSP----KMGSFLNALWGLSPKLMVISEQESNHNGSSLMERVTEALNFYAALFDCLESTVSRASTERQRIEKMLFGEEIKNII 390
                          7654433333....4666************************************************************************ PP

                 GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                          aceg++r+erhe+lekW  rle aGF+ vpls++ + qa++l++ ++ dgy+++ee+g+lv++W++rpL+svSaWr
  Manes.11G002500.1.p 391 ACEGTDRKERHEKLEKWVLRLELAGFGRVPLSYHGMLQASRLMQSYGYDGYKIKEENGCLVICWHSRPLFSVSAWR 466
                          ***************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.51416446IPR005202Transcription factor GRAS
PfamPF035143.1E-13542466IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MAPEDGASSP LQFFPWMSIS PGCGSPYPWP RELKSEERGL CLIHLLNACA NHVAAGNVEN  60
ANICLEQISH LASADGDTMQ RIAAYFTVAL ADKILKKGWP GLHRALTFTK KSLVSEEILV  120
QRLFFELFPF VKIAYVITNQ AIIEAMEGEK MVHIIDLNSF EPAQWINLLQ TLRARPEGPP  180
HLRITGIHEQ KEVLEQMAIR LTEEAEKLDI PFQFHPIVSK LEDLDIESLR VKTGEALAVS  240
SVLQLHTLLA ADDEMLKRNS PSESKNPISY NFQRALQINK NQRTLGEWLQ KDLVHVPGAS  300
PDSALSPLSL APSPKMGSFL NALWGLSPKL MVISEQESNH NGSSLMERVT EALNFYAALF  360
DCLESTVSRA STERQRIEKM LFGEEIKNII ACEGTDRKER HEKLEKWVLR LELAGFGRVP  420
LSYHGMLQAS RLMQSYGYDG YKIKEENGCL VICWHSRPLF SVSAWRFRRY D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-623446810380Protein SCARECROW
5b3h_D3e-623446810380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.11G002500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021627673.10.0scarecrow-like protein 3
RefseqXP_021627674.10.0scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A251JR310.0A0A251JR31_MANES; Uncharacterized protein
STRINGcassava4.1_023504m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23833484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]