PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.11G013500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family M-type_MADS
Protein Properties Length: 203aa    MW: 22819.2 Da    PI: 4.9171
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.11G013500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF75.15.4e-242370249
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                         ++e +  r+vtfskR+ngi+KKA ELS+LC+a+vavi+fs++gk++ y
  Manes.11G013500.1.p 23 KVEKENSRYVTFSKRKNGIFKKATELSTLCGADVAVILFSEHGKVFSY 70
                         6788899**************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006626.7171474IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-311473IPR002100Transcription factor, MADS-box
CDDcd002657.90E-351583No hitNo description
SuperFamilySSF554551.96E-281586IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-211636IPR002100Transcription factor, MADS-box
PfamPF003191.2E-242370IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-213651IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-215172IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MDATTDQRPL KRTRGRQKIE IKKVEKENSR YVTFSKRKNG IFKKATELST LCGADVAVIL  60
FSEHGKVFSY GNPNVEKVLD QYLAETEEGD DNSCVLESGS NGGTLTQTLQ EQDYEKSLRR  120
NNNVKKGEFW WDLAIDNMEK EEVEGFKESL EELKKNAMAR IEDQAAQNAV GESSTINQFI  180
DHNGVRNSST TTYGAGFNNE FL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A4e-181598287MEF2 CHIMERA
6bz1_B4e-181598287MEF2 CHIMERA
6bz1_C4e-181598287MEF2 CHIMERA
6bz1_D4e-181598287MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.11G013500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021600100.11e-113agamous-like MADS-box protein AGL62
TrEMBLA0A2C9UYK41e-147A0A2C9UYK4_MANES; Uncharacterized protein
STRINGcassava4.1_033915m1e-148(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.16e-31AGAMOUS-like 62