PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.11G026000.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

LBD

Protein Properties

Length: 248aa MW: 28338.8 Da PI: 4.8965

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.11G026000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	131.4	3.8e-41	17	116	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 aCaaCk++rrkCa+dC+lapyfp++++++f n+hklFG+sn++k++k+l+++++++am+++++++++ra+dPv G++++i++lq+q+e + Manes.11G026000.1.p 17 ACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKNLNQTDKDEAMRTIIFQSDVRANDPVGGCYRIIRELQRQIEYH 106 7*************************************************************************************** PP DUF260 91 kaelallkee 100 kael+l+ ++ Manes.11G026000.1.p 107 KAELDLVLHQ 116 **998776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51257	5	1	18	No hit	No description
PROSITE profile	PS50891	25.038	16	117	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.0E-38	17	113	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MSNPRIGNGN GNGTSQACAA CKYQRRKCAP DCILAPYFPH DRQRQFLNAH KLFGVSNITK 60 IIKNLNQTDK DEAMRTIIFQ SDVRANDPVG GCYRIIRELQ RQIEYHKAEL DLVLHQLAIC 120 RAQAQQQTHF QMLETDDSTT LGCEILNPDS LDVYDPTMIQ YHYPQTQEEE EQGFVIQDHN 180 QKLQENVDEA LPIQDSTSSP SLHDFKQHFV KECDDIKPLL DINDVKFEPE ELVERQLVPL 240 TQLVISS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-27	13	111	7	105	LOB family transfactor Ramosa2.1
5ly0_B	3e-27	13	111	7	105	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.11G026000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021626795.1	0.0	LOB domain-containing protein 22-like
Swissprot	Q9LRW1	9e-69	LBD22_ARATH; LOB domain-containing protein 22
TrEMBL	A0A2C9UXW9	0.0	A0A2C9UXW9_MANES; Uncharacterized protein
STRING	cassava4.1_022118m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4133	32	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	4e-71	LOB domain-containing protein 22

Link Out ? help Back to Top
Phytozome	Manes.11G026000.1.p

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]