PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.11G028600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family Dof
Protein Properties Length: 242aa    MW: 26336.8 Da    PI: 5.3091
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.11G028600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.67.4e-401777262
               zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                         ++++lkcprCdst+tkfCyynny+lsqPr+fCk+CrryWtkGG+lrn+PvGgg+rkn k+s
  Manes.11G028600.1.p 17 EQEQLKCPRCDSTKTKFCYYNNYNLSQPRHFCKNCRRYWTKGGTLRNIPVGGGSRKNTKRS 77
                         57899****************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-281376IPR003851Zinc finger, Dof-type
PfamPF027017.7E-331975IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.2082175IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102359IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MQDPSTAFQP MRPNWPEQEQ LKCPRCDSTK TKFCYYNNYN LSQPRHFCKN CRRYWTKGGT  60
LRNIPVGGGS RKNTKRSSNQ KRANSDPNPN PNTNTDPARL NCRVPESSSL TTTTQATSSS  120
QILANGISDL GDPTHIYGFE ADQEGKIQDM SCSFSSLLAP NVQFGSIYEG MNPNGSGLKM  180
VQMGGFGDDL NAGSGEAPGF DEQGSDINNE GEVGSYLQSS DWGNSNGWPD LAIYTPGSSF  240
Q*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.11G028600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021627374.11e-180dof zinc finger protein DOF3.1-like
SwissprotO821552e-38DOF17_ARATH; Dof zinc finger protein DOF1.7
TrEMBLA0A2C9UZC61e-179A0A2C9UZC6_MANES; Uncharacterized protein
STRINGcassava4.1_014990m1e-180(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61813351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51700.13e-39DOF zinc finger protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]