PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.11G033900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB_related
Protein Properties Length: 358aa    MW: 38883.4 Da    PI: 7.6868
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.11G033900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.38.5e-14115159347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT+eE+ l++ + ++lG+g+W+ Iar     Rt+ q+ s+ qky
  Manes.11G033900.1.p 115 PWTEEEHRLFLVGLQKLGKGDWRGIARNYVVSRTPTQVASHAQKY 159
                          8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.60.108.4E-4322IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129419.97108164IPR017930Myb domain
SuperFamilySSF466898.22E-17110165IPR009057Homeodomain-like
TIGRFAMsTIGR015576.0E-19111163IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.4E-11112158IPR009057Homeodomain-like
SMARTSM007174.3E-11112162IPR001005SANT/Myb domain
CDDcd001677.68E-10115160No hitNo description
PfamPF002491.8E-11115159IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MTRRCSHCSN NGHNSRTCPT RSTGGSSSSA SSAAGVRLFG VRLTDGSIIK KSASMGNLSA  60
HYHSSSSAAA SPNPGSPLSD HVRDSRNVPD GYLSDDPVHA SCSTTRRGER KKGVPWTEEE  120
HRLFLVGLQK LGKGDWRGIA RNYVVSRTPT QVASHAQKYF IRQTNATRRK RRSSLFDMAA  180
EPQTVPEEQE LPSLGGTDKA DTQPSLNLSL KPEYEPMQTA SEEQVKEPDE TVMDSSESSQ  240
TVPRLSESTP IVPQLSEFTP FVPGFFPAYV PIPYPFWPAN TVPIQELKAA ETSNHEVLKP  300
IPIFPKEPVN VDDLVGMSHL SIGETERGQR EPSPLSLKLI GEPSRQSAFH ANAPAVG*
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.11G033900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021628344.10.0transcription factor MYBS3-like
SwissprotQ7XC571e-99MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBLA0A2C9V0160.0A0A2C9V016_MANES; Uncharacterized protein
STRINGcassava4.1_010545m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77193346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16350.17e-95MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Su CF, et al.
    A novel MYBS3-dependent pathway confers cold tolerance in rice.
    Plant Physiol., 2010. 153(1): p. 145-58
    [PMID:20130099]