PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.11G035600.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ERF
Protein Properties Length: 174aa    MW: 19228.3 Da    PI: 4.9081
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.11G035600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.2e-184998154
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                         + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+ +++
  Manes.11G035600.2.p 49 PVYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFSTAEMAARAHDVAAMSIK 98
                         68*****998.**********843...6*********************98875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-124998IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-2750101IPR001471AP2/ERF domain
PROSITE profilePS5103220.25750107IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-185098IPR016177DNA-binding domain
SMARTSM003801.5E-2650109IPR001471AP2/ERF domain
PRINTSPR003674.4E-115162IPR001471AP2/ERF domain
CDDcd000181.12E-245194No hitNo description
PRINTSPR003674.4E-117389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MSEESTCSNS SSFPTAAAAT TTTDTSSSNS KAQDVVARKP KRARDSKHPV YRGVRMRSWG  60
KWVSEIREPR KKSRIWLGTF STAEMAARAH DVAAMSIKES SSSVSESEEL SEIVELPNIE  120
GSFDSAKPQT EFILFESVDG WVYPPEDMYG EFSDQWLGLE RLISSNFGAS VWN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1442111676Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.11G035600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002298236.12e-56ethylene-responsive transcription factor TINY
SwissprotQ9LYD35e-33DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A251JS971e-122A0A251JS97_MANES; Uncharacterized protein
STRINGPOPTR_0001s18800.19e-56(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.17e-30ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]