PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.11G079100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family CO-like
Protein Properties Length: 439aa    MW: 48743.9 Da    PI: 4.7598
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.11G079100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.44.4e-061648436
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
                         + C+ ++++ + l+C+ ++  lC  C  + H+ 
  Manes.11G079100.1.p 16 PPCDFCNSNVALLYCKADSAKLCFLCDHQVHSA 48
                         57***************************9954 PP
2CCT61.92e-21395435444
                  CCT   4 allRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          a+lRYkeK++tR+F+ ++rYesRKa+A++R RvKGrF+k+ 
  Manes.11G079100.1.p 395 AMLRYKEKKQTRRFDHRVRYESRKAIADTRTRVKGRFAKAG 435
                          89************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003367.8E-81360IPR000315B-box-type zinc finger
CDDcd000219.50E-61648No hitNo description
PROSITE profilePS501198.8871860IPR000315B-box-type zinc finger
PROSITE profilePS5101714.445392434IPR010402CCT domain
PfamPF062035.6E-16395434IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MEDSLCSQSR NSLLIPPCDF CNSNVALLYC KADSAKLCFL CDHQVHSANA LSLKHLRSLI  60
CDNCWAESAS VQFSLDNLVL CQDCDASFSV SPPFHSRIPI EGFTGCPPAI ELASLFGLDL  120
QPKIFTTSDT GCSLYEQKTV DLQDLLVPSG SSSVFLCSGK CRREMHQQLM ELGKRENIRV  180
DGDAEELGPE TPPSRCAQLR SLESLEVDNV DEEELLNQQV PFTSVLPNQE GASDSEGDLL  240
WDCDPPYQAA QIWDFQLGAT RDCAEPGPKE AGDNAKDPGL RIKNYDNLTE EAAFNTRKLS  300
EDIYELNFST PSENIRSRDS CSNKKLSMDT ARTGETETTS LIEPSLESIL MEAKTCTSPS  360
NVQVAERSPL ACFGTAFRVR PKVDMELLAK NRCIAMLRYK EKKQTRRFDH RVRYESRKAI  420
ADTRTRVKGR FAKAGENC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.11G079100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021627456.10.0zinc finger protein CONSTANS-LIKE 14-like
TrEMBLA0A2C9UZE60.0A0A2C9UZE6_MANES; Uncharacterized protein
STRINGcassava4.1_026736m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47372843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.17e-61B-box type zinc finger protein with CCT domain