PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.11G079400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 155aa    MW: 17373.4 Da    PI: 8.4788
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.11G079400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.000113961123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C +C++ F ++  L  H++ H
  Manes.11G079400.1.p 39 FQCLYCPRKFYTSQALGGHQNAH 61
                         89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.54E-63766No hitNo description
PROSITE profilePS5015710.8453966IPR007087Zinc finger, C2H2
PROSITE patternPS0002804161IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MTDSSMHNFL NQQRRRPLAS RPPRKNPTTP PSASFSRLFQ CLYCPRKFYT SQALGGHQNA  60
HKRERAAAAH RNIYVEPMCH HYPTEPYVDS GAPFLDQYWL EPIQTHQFAP AANRFLLPQD  120
GSYGGSASSP DNDSLFPVAD LTNDAANLDL TLRL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.11G079400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021627068.11e-112zinc finger protein KNUCKLES-like
TrEMBLA0A2C9V0M01e-111A0A2C9V0M0_MANES; Uncharacterized protein
STRINGcassava4.1_026506m1e-111(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15014811
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14010.13e-09C2H2 family protein