PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.11G081400.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

BBR-BPC

Protein Properties

Length: 315aa MW: 34766.4 Da PI: 9.8734

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.11G081400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	351.6	1.8e-107	1	314	1	301
GAGA_bind 1 mdddgsre.rnkg.yye................paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernk 72 mdd g+ + r k yy+ ++++l +++++m+++aerd++i+ern+al+ekk+a+a+rd+a+++r+kalaer+k Manes.11G081400.1.p 1 MDDGGQPNgRYKIdYYKaanspwtlmpppqlkeQNNALV--MNKKIMAILAERDTAIQERNIALAEKKEALAARDEALQEREKALAERDK 88 99999999999988999******98877753335555..99******************************************* PP GAGA_bind 73 alverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkek 162 al+erdn+l+a++++en+l + pvg + +g+k i + +++ a++ e+++++a+pi++ e+ + +++k+ +++k+ +k Manes.11G081400.1.p 89 ALMERDNALAAIQYRENGL--NFPVGNGNQQGSKRIPHPVY--NSNAVAGAINSGEMHITDAFPITTVSAETLKPRQTKRPKENKSVSSK 174 *************95..5688899999*98766..566677788889********99999988888777777766666 PP GAGA_bind 163 kakkkkkksekskkkvkkesad.erskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrr 251 ak+++k +++ ++ +++ ++d ++ k e++ d +ln vs+De+t+PvPvC+CtGa++qCYkWGnGGWqS+CCttt+S yPLP+++++r Manes.11G081400.1.p 175 PAKSPRKGNKVGEDLNRQGTSDgKKFKVEWDGHDAGLNLVSFDETTMPVPVCTCTGAPHQCYKWGNGGWQSSCCTTTMSSYPLPQMPNKR 264 6666666554444444444444588************************************************************* PP GAGA_bind 252 gaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 +aR++grKmS+++f+klL++La+eG+dls p+DLkd+WA+HGtn+++ti+ Manes.11G081400.1.p 265 HARVGGRKMSGSVFTKLLSRLASEGHDLSVPLDLKDYWARHGTNRYITIK 314 ***********************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06217	1.7E-99	1	314	IPR010409	GAGA-binding transcriptional activator
SMART	SM01226	2.8E-158	1	314	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MDDGGQPNGR YKIDYYKAAN SPWTLMPPPQ LKEQNNALVM NKKIMAILAE RDTAIQERNI 60 ALAEKKEALA ARDEALQERE KALAERDKAL MERDNALAAI QYRENGLNFP VGNGNQQGSK 120 RIPHPVYNSN AVAGAINSGE MHITDAFPIT TVSAETLKPR QTKRPKENKS VSSKPAKSPR 180 KGNKVGEDLN RQGTSDGKKF KVEWDGHDAG LNLVSFDETT MPVPVCTCTG APHQCYKWGN 240 GGWQSSCCTT TMSSYPLPQM PNKRHARVGG RKMSGSVFTK LLSRLASEGH DLSVPLDLKD 300 YWARHGTNRY ITIK*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.11G081400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021628900.1	0.0	protein BASIC PENTACYSTEINE4-like
Refseq	XP_021628901.1	0.0	protein BASIC PENTACYSTEINE4-like
Swissprot	Q8S8C6	1e-135	BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBL	A0A251K9F6	0.0	A0A251K9F6_MANES; Uncharacterized protein
STRING	cassava4.1_012194m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6974	33	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21240.2	1e-131	basic pentacysteine 4

Link Out ? help Back to Top
Phytozome	Manes.11G081400.1.p