PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.11G084700.5.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

MYB_related

Protein Properties

Length: 1128aa MW: 123101 Da PI: 4.4479

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.11G084700.5.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.7	3.7e-10	983	1024	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rW++++ el++++++q+G++ + I + ++ gRt+ q+k+++ k Manes.11G084700.5.p 983 RWSKQDTELFYEGIRQFGTD-LSMIQQLFP-GRTRHQIKLKYKK 1024 9*****************.*****.*********87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF15963	1.7E-28	974	1058	No hit	No description
PROSITE profile	PS51293	9.846	979	1027	IPR017884	SANT domain
SMART	SM00717	1.4E-7	980	1028	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-5	981	1024	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.53E-10	983	1030	IPR009057	Homeodomain-like
CDD	cd00167	1.40E-6	983	1024	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1128 aa Download sequence Send to blast
MDSDLDSFDD ILLEPAVAHA ARAAGKFQPR AKPRARKITS TSLPSVLPSN TREKSDSSFP 60 TTLDTTKPVQ SVNPLDDRLI SPVDSSLVLP SIVLGSEELL ENNKNNLKCE PLNSSTQTVG 120 RREDLASPDS LPSEFVVTDS SNNGYSNFLF IEAGSSRLDL DPVDVVVPDT TSSKDVTGNG 180 SKVPVSLSMT TLDVAGEPWK DNDRLSPHEK GSSVTSNLSP ARAENAGSVA ASLDGNGELN 240 SSLLKSVEDV DSLGFDLDQP DIMFPECHAS DSRAGKKFQP KVRSHRRKEI SGSSMEQPAT 300 VAAVNSHTTQ PVESVLTMDK PVDPVCPSSP NLDNESNEPS KENEVLLPHD NNLELVSPSS 360 KEFMPKGDMS SKEAYLAGLD SNFGQKPSGV ADSPIEVNSL GLDLDPFADI VLPPAISNAR 420 AGGKFQPRGK ARPRKVTSES NSFAVSGATV EGPASVVSTV SDNLQSAKFI DVGDGRLMDS 480 VYSTLTTMKS MESKEALRND DCTNSGVLLF KVDRSSGLEN SSHLVASDAL HIGDIDRDPH 540 SGLGKSIGEN ADIFSGLEYI HDFVTQSPRT EIPLPASSDG TEEHSRFPAQ ISVNSSAPGA 600 CNEATENVVT CNEAAVEIDN GKPQSDEPGS FPDFESPGIL SESAIALECC TRNTQPKSMV 660 QNGKEIPSTS ILPDASPPNT QIDPSESVYI DVGSIPTFPS EDVLDYSSIS FGNFIPADPT 720 RSEFPVNEER TNLAETSCSS DLNILHHEDV STVPAKESSK DRKRKSSSAS YLAQNESVKS 780 ARQLRKRTIA SQVVDGPEDE AQDSDGFPSE HRNSSIADGD IDYDYRVDED NDNEDKVENT 840 SSSRRASKKS KKPMAEQEKK PVSRRKRKND APEQPNQQSR KKFSHSTRRK SRLKDLLSIP 900 EDEIDYQKMP FKDIILLAGY KEDLAIKEAK ASKNSTKKSS TNSLHGEEED DTVTSEQDGG 960 VADDQSNSLF NCHSFMDKTP TARWSKQDTE LFYEGIRQFG TDLSMIQQLF PGRTRHQIKL 1020 KYKKEERQHP LRLSEALSNR AKDHSYFEKV MEQLQQVAAQ EERESNRGNS VSLTDDEEAQ 1080 LNPETNEEVA KSDEQDEDVT VDQDGDPLKY DEDDDDFDIW GSYKSEY*

Sequence ? help Back to Top

Protein Sequence Length: 1128 aa Download sequence Send to blast

MDSDLDSFDD ILLEPAVAHA ARAAGKFQPR AKPRARKITS TSLPSVLPSN TREKSDSSFP  60
TTLDTTKPVQ SVNPLDDRLI SPVDSSLVLP SIVLGSEELL ENNKNNLKCE PLNSSTQTVG  120
RREDLASPDS LPSEFVVTDS SNNGYSNFLF IEAGSSRLDL DPVDVVVPDT TSSKDVTGNG  180
SKVPVSLSMT TLDVAGEPWK DNDRLSPHEK GSSVTSNLSP ARAENAGSVA ASLDGNGELN  240
SSLLKSVEDV DSLGFDLDQP DIMFPECHAS DSRAGKKFQP KVRSHRRKEI SGSSMEQPAT  300
VAAVNSHTTQ PVESVLTMDK PVDPVCPSSP NLDNESNEPS KENEVLLPHD NNLELVSPSS  360
KEFMPKGDMS SKEAYLAGLD SNFGQKPSGV ADSPIEVNSL GLDLDPFADI VLPPAISNAR  420
AGGKFQPRGK ARPRKVTSES NSFAVSGATV EGPASVVSTV SDNLQSAKFI DVGDGRLMDS  480
VYSTLTTMKS MESKEALRND DCTNSGVLLF KVDRSSGLEN SSHLVASDAL HIGDIDRDPH  540
SGLGKSIGEN ADIFSGLEYI HDFVTQSPRT EIPLPASSDG TEEHSRFPAQ ISVNSSAPGA  600
CNEATENVVT CNEAAVEIDN GKPQSDEPGS FPDFESPGIL SESAIALECC TRNTQPKSMV  660
QNGKEIPSTS ILPDASPPNT QIDPSESVYI DVGSIPTFPS EDVLDYSSIS FGNFIPADPT  720
RSEFPVNEER TNLAETSCSS DLNILHHEDV STVPAKESSK DRKRKSSSAS YLAQNESVKS  780
ARQLRKRTIA SQVVDGPEDE AQDSDGFPSE HRNSSIADGD IDYDYRVDED NDNEDKVENT  840
SSSRRASKKS KKPMAEQEKK PVSRRKRKND APEQPNQQSR KKFSHSTRRK SRLKDLLSIP  900
EDEIDYQKMP FKDIILLAGY KEDLAIKEAK ASKNSTKKSS TNSLHGEEED DTVTSEQDGG  960
VADDQSNSLF NCHSFMDKTP TARWSKQDTE LFYEGIRQFG TDLSMIQQLF PGRTRHQIKL  1020
KYKKEERQHP LRLSEALSNR AKDHSYFEKV MEQLQQVAAQ EERESNRGNS VSLTDDEEAQ  1080
LNPETNEEVA KSDEQDEDVT VDQDGDPLKY DEDDDDFDIW GSYKSEY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.11G084700.5.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021628026.1	0.0	uncharacterized protein LOC110626433
TrEMBL	A0A2C9V1J1	0.0	A0A2C9V1J1_MANES; Uncharacterized protein
STRING	cassava4.1_000789m	0.0	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	8e-39	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Manes.11G084700.5.p