PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.11G103500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family YABBY
Protein Properties Length: 191aa    MW: 21197 Da    PI: 8.4996
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.11G103500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY223.65.5e-6931573170
                YABBY   3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesa 92 
                          ++  se+vCyv+CnfCntilav+vPs+ l+++vtvrCGhC++llsvn+  + q+ + ++              ++++ nl+s + ++++ 
  Manes.11G103500.1.p   3 LDLVSERVCYVHCNFCNTILAVNVPSNNLLNIVTVRCGHCANLLSVNMGASLQTFPLQDP-------------QSQKVNLNSEDFNKDCG 79 
                          66789********************************************99999998885.............34444455555555554 PP

                YABBY  93 stsvssekl.senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                          s+s+ ++    e+ d+e pr+pp irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl
  Manes.11G103500.1.p  80 SSSKCNKVTaFESGDQEPPRMPP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 157
                          444444333246789999**999.9****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046903.2E-737157IPR006780YABBY protein
SuperFamilySSF470952.75E-8102150IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.0E-5105151IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
GO:0010158Biological Processabaxial cell fate specification
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MSLDLVSERV CYVHCNFCNT ILAVNVPSNN LLNIVTVRCG HCANLLSVNM GASLQTFPLQ  60
DPQSQKVNLN SEDFNKDCGS SSKCNKVTAF ESGDQEPPRM PPIRPPEKRQ RVPSAYNRFI  120
KEEIQRIKAS NPDISHREAF STAAKNWAHF PHIHFGLKLD GNKHAKLDHQ SFAGEGSKKS  180
NGFYEINGTL *
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.11G103500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021627464.11e-142putative axial regulator YABBY 2
RefseqXP_021627465.11e-142putative axial regulator YABBY 2
RefseqXP_021627466.11e-142putative axial regulator YABBY 2
SwissprotQ9XFB01e-82YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBLA0A2C9UZV81e-140A0A2C9UZV8_MANES; Uncharacterized protein
STRINGcassava4.1_016957m1e-141(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112434112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.12e-75YABBY family protein
Publications ? help Back to Top
  1. Sacharowski SP, et al.
    SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development.
    Plant Cell, 2015. 27(7): p. 1889-906
    [PMID:26106148]